Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiD   Type   Regulator
Locus tag   ACB340_RS01395 Genome accession   NZ_CP167005
Coordinates   262663..263589 (+) Length   308 a.a.
NCBI ID   WP_023079327.1    Uniprot ID   -
Organism   Streptococcus pyogenes strain Isolate 27     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 257663..268589
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACB340_RS01385 (ACB340_01385) amiA 259126..261096 (+) 1971 WP_023079331.1 peptide ABC transporter substrate-binding protein Regulator
  ACB340_RS01390 (ACB340_01390) amiC 261161..262663 (+) 1503 WP_011017334.1 ABC transporter permease Regulator
  ACB340_RS01395 (ACB340_01395) amiD 262663..263589 (+) 927 WP_023079327.1 oligopeptide ABC transporter permease OppC Regulator
  ACB340_RS01400 (ACB340_01400) amiE 263598..264668 (+) 1071 WP_010921893.1 ABC transporter ATP-binding protein Regulator
  ACB340_RS01405 (ACB340_01405) amiF 264661..265584 (+) 924 WP_002986000.1 ABC transporter ATP-binding protein Regulator
  ACB340_RS01410 (ACB340_01410) - 265569..265712 (-) 144 WP_366652599.1 IS3 family transposase -
  ACB340_RS01415 (ACB340_01415) - 265733..265972 (-) 240 WP_023077809.1 hypothetical protein -

Sequence

Protein


Download         Length: 308 a.a.        Molecular weight: 34848.78 Da        Isoelectric Point: 8.5670

>NTDB_id=1037080 ACB340_RS01395 WP_023079327.1 262663..263589(+) (amiD) [Streptococcus pyogenes strain Isolate 27]
MESIDKSKFRFVERDSEASEVIDTPAYSYWKSVFRQFFSKKSTVFMLVILVTVLMMSFIYPMFANYDFNDVSNINDFSKR
YIWPNAEYWFGTDKNGQSLFDGVWYGARNSILISVIATLINITIGVVLGAIWGVSKAFDKVMIEIYNIISNIPSMLIIIV
LTYSLGAGFWNLILAFCITGWIGVAYSIRVQILRYRDLEYNLASQTLGTPMYKIAVKNLLPQLVSVIMTMLSQMLPVYVS
SEAFLSFFGVGLPTTTPSLGRLIANYSSNLTTNAYLFWIPLVTLILVSLPLYIVGQNLADASDPRSHR

Nucleotide


Download         Length: 927 bp        

>NTDB_id=1037080 ACB340_RS01395 WP_023079327.1 262663..263589(+) (amiD) [Streptococcus pyogenes strain Isolate 27]
ATGGAATCGATTGATAAATCTAAATTTCGATTTGTTGAGCGCGATAGTGAAGCCTCCGAAGTGATTGATACCCCTGCTTA
TTCTTACTGGAAATCAGTGTTTCGTCAGTTTTTTTCTAAAAAATCTACAGTCTTTATGCTCGTGATTTTAGTGACAGTCT
TGATGATGAGCTTTATTTATCCAATGTTTGCCAACTACGACTTTAATGACGTTAGTAATATCAATGACTTTTCAAAGCGT
TATATTTGGCCAAATGCAGAGTACTGGTTTGGAACCGACAAAAATGGGCAATCTCTGTTTGATGGTGTTTGGTATGGGGC
ACGTAATTCTATTTTAATCTCAGTTATAGCGACACTAATTAATATCACCATTGGGGTAGTGTTAGGAGCCATATGGGGAG
TTTCTAAAGCATTTGATAAAGTTATGATTGAAATTTATAACATTATCTCAAATATCCCTTCTATGCTTATTATCATTGTT
TTGACCTATTCATTAGGTGCAGGATTTTGGAATTTGATTCTAGCTTTCTGTATCACTGGATGGATTGGTGTCGCCTACTC
CATCCGTGTTCAAATCTTGCGTTACCGTGATTTAGAATACAACCTTGCTAGTCAAACTTTGGGAACACCAATGTACAAGA
TTGCTGTTAAGAACCTCCTGCCTCAATTGGTTTCAGTTATCATGACTATGTTGTCACAAATGCTACCAGTTTATGTATCT
TCTGAGGCCTTCTTATCCTTCTTTGGGGTTGGTTTACCCACCACTACTCCAAGTTTAGGACGTTTGATTGCTAATTATTC
AAGCAACTTAACAACAAATGCCTACCTCTTTTGGATTCCCTTAGTAACATTGATTTTAGTATCGTTACCACTATACATTG
TCGGACAAAACTTGGCTGATGCCAGTGACCCACGTTCACATAGATAG

Domains

Predicted by InterproScan.

N-terminal TM domain of oligopeptide transport permease C (OppC_N)

(28-72)

Binding-protein-dependent transport system inner membrane component (BPD_transp_1)

(125-305)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiD Streptococcus salivarius strain HSISS4

73.701

100

0.737
  amiD Streptococcus thermophilus LMG 18311

73.052

100

0.731
  amiD Streptococcus thermophilus LMD-9

73.052

100

0.731

Multiple sequence alignment