Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   LQ159_RS00340 Genome accession   NZ_OW968124
Coordinates   71171..71839 (+) Length   222 a.a.
NCBI ID   WP_001336353.1    Uniprot ID   -
Organism   Escherichia coli isolate 10     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 66171..76839
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LQ159_RS00310 (AI2853V1_0061) yicC 66191..67054 (-) 864 WP_000621340.1 YicC/YloC family endoribonuclease -
  LQ159_RS00315 (AI2853V1_0062) rph 67181..67897 (+) 717 WP_001247093.1 ribonuclease PH -
  LQ159_RS00320 (AI2853V1_0063) pyrE 67962..68603 (+) 642 WP_000806177.1 orotate phosphoribosyltransferase -
  LQ159_RS00325 (AI2853V1_0064) slmA 68640..69236 (-) 597 WP_000818601.1 nucleoid occlusion factor SlmA -
  LQ159_RS00330 (AI2853V1_0065) dut 69343..69801 (-) 459 WP_000976070.1 dUTP diphosphatase -
  LQ159_RS00335 (AI2853V1_0066) coaBC 69779..70999 (-) 1221 WP_000050139.1 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC -
  LQ159_RS00340 (AI2853V1_0067) radC 71171..71839 (+) 669 WP_001336353.1 DNA repair protein RadC Machinery gene
  LQ159_RS00345 (AI2853V1_0068) rpmB 72056..72292 (+) 237 WP_000091955.1 50S ribosomal protein L28 -
  LQ159_RS00350 (AI2853V1_0069) rpmG 72313..72480 (+) 168 WP_001051798.1 50S ribosomal protein L33 -
  LQ159_RS00355 (AI2853V1_0070) mutM 72578..73387 (+) 810 WP_001114529.1 bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase -
  LQ159_RS00360 (AI2853V1_0071) coaD 73426..73905 (-) 480 WP_001171873.1 pantetheine-phosphate adenylyltransferase -
  LQ159_RS00365 (AI2853V1_0072) waaA 73913..75190 (-) 1278 WP_000891566.1 lipid IV(A) 3-deoxy-D-manno-octulosonic acid transferase -
  LQ159_RS00370 (AI2853V1_0073) rfaQ 75597..76667 (+) 1071 WP_001311221.1 lipopolysaccharide core heptosyltransferase RfaQ -

Sequence

Protein


Download         Length: 222 a.a.        Molecular weight: 25290.41 Da        Isoelectric Point: 7.8777

>NTDB_id=1037076 LQ159_RS00340 WP_001336353.1 71171..71839(+) (radC) [Escherichia coli isolate 10]
MKNNSQLLMPREKMLKFGISALTDVELLALFLRTGTRGKDVLTLAKEMLENFGSLYGLLTSEYEQFSGVHGIGVAKFAQL
KGIAELARRYYNVRMREESPLLSPEMTREFLQSQLTGEEREIFMVIFLDSQHRVITHCRLFSGTLNHVEVHPREIIREAI
KINASALILAHNHPSGCAEPSKADKLITERIIKSCQFMDLRVLDHIVIGRGEYVSFAERGWI

Nucleotide


Download         Length: 669 bp        

>NTDB_id=1037076 LQ159_RS00340 WP_001336353.1 71171..71839(+) (radC) [Escherichia coli isolate 10]
GTGAAAAACAATTCACAGCTGTTGATGCCGCGCGAAAAAATGCTGAAGTTTGGTATTAGCGCCTTAACGGATGTCGAGCT
GCTGGCGCTATTTCTGCGTACCGGAACGCGCGGTAAAGATGTATTAACCCTGGCAAAAGAGATGCTGGAGAATTTCGGCT
CTCTTTATGGCTTGTTAACCTCTGAATATGAACAATTTAGTGGCGTTCATGGAATTGGCGTGGCGAAATTTGCCCAGTTA
AAGGGGATTGCTGAACTGGCGCGGCGTTACTACAACGTGCGGATGCGTGAAGAAAGCCCTTTACTCAGCCCGGAGATGAC
GCGGGAATTTTTACAAAGCCAGCTCACGGGTGAGGAGCGGGAGATCTTTATGGTGATCTTTCTCGACTCACAACACCGGG
TTATAACGCATTGCCGTCTTTTTTCCGGCACGCTAAACCATGTTGAAGTCCATCCTCGGGAAATTATCCGCGAAGCGATA
AAAATAAACGCCTCGGCGCTGATCCTTGCACATAATCACCCTTCGGGTTGTGCTGAACCCAGTAAAGCGGATAAACTCAT
TACTGAACGGATAATAAAGAGTTGTCAGTTCATGGATTTACGCGTGCTCGACCATATCGTGATTGGGCGTGGAGAGTATG
TTTCTTTTGCCGAACGCGGTTGGATTTAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(103-220)

UPF0758 N-terminal (UPF0758_N)

(9-77)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

49.55

100

0.496

Multiple sequence alignment