Detailed information    

insolico Bioinformatically predicted

Overview


Name   spo0J   Type   Regulator
Locus tag   ACB354_RS09880 Genome accession   NZ_CP167004
Coordinates   1902684..1903460 (+) Length   258 a.a.
NCBI ID   WP_002981939.1    Uniprot ID   -
Organism   Streptococcus pyogenes strain Isolate 28     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context


Location: 1897684..1908460
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACB354_RS09855 (ACB354_09860) - 1898209..1899312 (-) 1104 WP_011185110.1 IS30 family transposase -
  ACB354_RS09860 (ACB354_09865) - 1899512..1900286 (-) 775 Protein_1883 IS30 family transposase -
  ACB354_RS09870 (ACB354_09875) rlmH 1900681..1901160 (-) 480 WP_002981964.1 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH -
  ACB354_RS09875 (ACB354_09880) htrA 1901372..1902595 (+) 1224 WP_002991468.1 S1C family serine protease Regulator
  ACB354_RS09880 (ACB354_09885) spo0J 1902684..1903460 (+) 777 WP_002981939.1 ParB/RepB/Spo0J family partition protein Regulator

Sequence


Protein


Download         Length: 258 a.a.        Molecular weight: 29056.87 Da        Isoelectric Point: 10.3100

>NTDB_id=1037065 ACB354_RS09880 WP_002981939.1 1902684..1903460(+) (spo0J) [Streptococcus pyogenes strain Isolate 28]
MTKELLIDLPIEDIVTNPYQPRIQFNQRELQDLATSIKSNGLIQPIIVRKSDIFGYELVAGERRLKASKMAGLKKIPAII
KKISTLESMQQAIVENLQRSNLNAIEEAKAYQLLVEKKHMTHDEIAKYMGKSRPYISNTLRLLQLPAPIIKAIEEGKISA
GHARALLTLSDDKQQLYLTHKIQNEGLSVRQIEQLVTSTPSSKLSKKTKNIFATSLEKQLAKSLGLSVNMKLTANHSGYL
QISFSNDDELNRIINKLK

Nucleotide


Download         Length: 777 bp        

>NTDB_id=1037065 ACB354_RS09880 WP_002981939.1 1902684..1903460(+) (spo0J) [Streptococcus pyogenes strain Isolate 28]
ATGACAAAAGAATTATTGATAGACCTACCAATTGAAGATATTGTTACAAATCCCTATCAGCCAAGGATACAATTTAATCA
AAGAGAACTCCAAGACCTAGCAACTTCTATTAAATCAAACGGCCTCATTCAACCTATTATTGTTCGAAAATCTGACATTT
TTGGCTATGAGTTAGTTGCTGGAGAACGACGACTTAAAGCTTCAAAAATGGCTGGTCTAAAAAAAATTCCAGCTATCATC
AAGAAGATCTCTACACTCGAGAGCATGCAACAAGCTATAGTTGAAAATTTACAACGTTCTAACCTTAACGCTATCGAAGA
AGCTAAAGCCTATCAGTTATTGGTTGAAAAAAAACACATGACTCACGATGAGATTGCTAAATATATGGGAAAATCAAGAC
CTTATATTAGCAATACCTTACGTCTGTTACAACTCCCAGCACCTATCATTAAAGCAATTGAAGAAGGAAAAATTAGTGCG
GGACACGCGCGTGCTCTTTTAACTTTGAGTGATGATAAGCAACAACTGTACCTCACTCATAAAATACAAAATGAAGGCCT
AAGTGTTAGGCAAATTGAGCAACTGGTTACTTCTACCCCAAGTTCGAAGCTATCTAAAAAAACTAAAAATATTTTTGCCA
CTTCTTTAGAGAAACAATTGGCTAAATCATTGGGACTCTCTGTCAATATGAAGCTGACAGCAAACCATAGTGGGTACCTT
CAGATATCTTTTTCCAATGATGATGAATTAAACAGAATTATCAACAAGCTAAAGTAG


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  spo0J Streptococcus mutans UA159

59.144

99.612

0.589


Multiple sequence alignment