Detailed information NTG1037063

Bioinformatically predicted

Overview

• Name: cytR
• Type: Regulator
• Locus tag: LQ120_RS21900
• Genome accession: NZ_OW968111
• Coordinates: 4532536..4533561 (+)
• Length: 341 a.a.
• NCBI ID: WP_000644904.1
• Uniprot ID: P0ACN8
• Organism: Escherichia coli isolate 602
• Function: promote competence gene expression (predicted from homology) Competence regulation

Genomic Context

Location: 4527536..4538561

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
LQ120_RS21890 (AI2860V1_4241)	rpmE	4529767..4529979 (-)	213	WP_000710769.1	50S ribosomal protein L31	-
LQ120_RS21895 (AI2860V1_4242)	priA	4530182..4532380 (+)	2199	WP_001440832.1	primosomal protein N'	Machinery gene
LQ120_RS21900 (AI2860V1_4243)	cytR	4532536..4533561 (+)	1026	WP_000644904.1	DNA-binding transcriptional regulator CytR	Regulator
LQ120_RS21905 (AI2860V1_4244)	ftsN	4533653..4534612 (+)	960	WP_000068834.1	cell division protein FtsN	-
LQ120_RS21910 (AI2860V1_4245)	hslV	4534705..4535235 (+)	531	WP_000208242.1	ATP-dependent protease subunit HslV	-
LQ120_RS21915 (AI2860V1_4246)	hslU	4535245..4536576 (+)	1332	WP_001293343.1	HslU--HslV peptidase ATPase subunit	-
LQ120_RS21920 (AI2860V1_4247)	menA	4536643..4537569 (+)	927	WP_001307494.1	1,4-dihydroxy-2-naphthoate polyprenyltransferase	-
LQ120_RS21925 (AI2860V1_4248)	rraA	4537662..4538147 (+)	486	WP_000872908.1	ribonuclease E activity regulator RraA	-
LQ120_RS21930 (AI2860V1_4249)	zapB	4538232..4538477 (-)	246	WP_001296623.1	septal ring assembly protein ZapB	-

Sequence

Protein

• Length: 341 a.a.
• Molecular weight: 37819.78 Da
• Isoelectric Point: 6.3842

>NTDB_id=1037063 LQ120_RS21900 WP_000644904.1 4532536..4533561(+) (cytR) [Escherichia coli isolate 602]
MKAKKQETAATMKDVALKAKVSTATVSRALMNPDKVSQATRNRVEKAAREVGYLPQPMGRNVKRNESRTILVIVPDICDP
FFSEIIRGIEVTAANHGYLVLIGDCAHQNQQEKTFIDLIITKQIDGMLLLGSRLPFDASIEEQRNLPPMVMANEFAPELE
LPTVHIDNLTAAFDAVNYLYEQGHKRIGCIAGPEEMPLCHYRLQGYVQALRRCGIMVDPQYIARGDFTFEAGSKAMQQLL
DLPQPPTAVFCHSDVMALGALSQAKRQGLKVPEDLSIIGFDNIDLTQFCDPPLTTIAQPRYEIGREAMLLLLDQMQGQHV
GSGSRLMDCELIIRGSTRALP

Nucleotide

• Length: 1026 bp

>NTDB_id=1037063 LQ120_RS21900 WP_000644904.1 4532536..4533561(+) (cytR) [Escherichia coli isolate 602]
GTGAAAGCGAAGAAGCAGGAAACTGCCGCGACCATGAAAGACGTTGCCCTCAAGGCAAAAGTCTCTACAGCGACTGTCTC
CCGAGCATTAATGAATCCCGATAAAGTCTCCCAGGCCACCCGTAATCGGGTTGAAAAAGCGGCCCGGGAAGTGGGTTATT
TACCGCAGCCTATGGGGCGCAACGTCAAGCGTAATGAATCCCGCACCATTCTGGTGATTGTCCCGGATATCTGCGATCCC
TTCTTTAGCGAAATTATTCGCGGTATCGAAGTTACGGCGGCAAATCACGGATATCTGGTGCTGATTGGCGACTGTGCGCA
TCAAAATCAGCAGGAAAAAACCTTTATCGATTTGATCATCACCAAGCAAATTGATGGCATGTTGCTGCTGGGTTCAAGGC
TGCCGTTTGATGCCAGCATTGAGGAACAGCGTAATCTGCCGCCGATGGTGATGGCGAACGAATTCGCACCGGAACTGGAG
CTACCTACAGTTCATATCGACAATCTGACCGCCGCATTTGATGCAGTAAATTATCTATATGAGCAAGGGCATAAACGGAT
TGGCTGTATAGCCGGTCCCGAAGAGATGCCGCTGTGTCACTACCGCCTGCAAGGTTACGTTCAGGCGCTGCGTCGCTGCG
GCATTATGGTTGATCCGCAATACATCGCCCGTGGCGACTTCACCTTCGAAGCCGGAAGCAAAGCGATGCAGCAGCTGCTT
GATCTTCCACAACCGCCTACTGCTGTCTTCTGCCATAGCGATGTGATGGCGCTCGGCGCACTTTCTCAGGCAAAACGCCA
GGGGCTGAAAGTCCCGGAAGACCTTTCCATAATCGGTTTTGATAACATCGACCTGACGCAATTTTGTGATCCGCCGCTGA
CAACCATCGCGCAGCCGCGTTACGAAATCGGTCGGGAAGCTATGCTGTTATTGCTTGATCAAATGCAGGGGCAACACGTT
GGCAGTGGCTCTCGTTTAATGGACTGCGAACTTATCATCCGGGGATCAACACGCGCGTTACCTTAA

Domains

Predicted by InterProScan.

• Bacterial regulatory proteins, lacI family (LacI) (11-56)

• Periplasmic binding protein-like domain (Peripla_BP_3) (176-337)

3D structure

• AlphaFold DB: P0ACN8

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
cytR	Vibrio parahaemolyticus RIMD 2210633	64.179	98.24	0.63
cytR	Vibrio cholerae C6706	65.443	95.894	0.628