Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   LQ120_RS08870 Genome accession   NZ_OW968111
Coordinates   1841089..1842516 (-) Length   475 a.a.
NCBI ID   WP_000980629.1    Uniprot ID   -
Organism   Escherichia coli isolate 602     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1836089..1847516
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LQ120_RS08840 (AI2860V1_1726) yeeZ 1836144..1836968 (+) 825 WP_000754749.1 SDR family oxidoreductase -
  LQ120_RS08845 (AI2860V1_1727) yeeY 1837014..1837943 (+) 930 WP_000803351.1 LysR substrate-binding domain-containing protein -
  LQ120_RS08850 yoeI 1838158..1838220 (+) 63 WP_010723108.1 membrane protein YoeI -
  LQ120_RS08855 (AI2860V1_1728) plaP 1838210..1839568 (+) 1359 WP_000019197.1 putrescine/proton symporter PlaP -
  LQ120_RS08860 (AI2860V1_1729) tsuA 1839747..1840805 (+) 1059 WP_023568741.1 thiosulfate utilization transporter TsuA/YeeE -
  LQ120_RS08865 (AI2860V1_1730) tsuB 1840819..1841046 (+) 228 WP_000985273.1 thiosulfate utilization sulfurtransferase TsuB/YeeD -
  LQ120_RS08870 (AI2860V1_1731) sbcB 1841089..1842516 (-) 1428 WP_000980629.1 exodeoxyribonuclease I Machinery gene
  LQ120_RS08875 (AI2860V1_1732) dacD 1842725..1843891 (+) 1167 WP_144745841.1 serine-type D-Ala-D-Ala carboxypeptidase DacD -
  LQ120_RS08880 (AI2860V1_1733) sbmC 1844010..1844483 (+) 474 WP_001105415.1 DNA gyrase inhibitor SbmC -
  LQ120_RS08885 (AI2860V1_1734) yeeA 1844681..1845739 (+) 1059 WP_001200891.1 FUSC family protein -
  LQ120_RS08890 (AI2860V1_1735) tmaR 1845911..1846240 (+) 330 WP_000450409.1 DUF496 family protein -
  LQ120_RS08895 (AI2860V1_1736) - 1846341..1846784 (-) 444 WP_001369832.1 EutP/PduV family microcompartment system protein -
  LQ120_RS08900 (AI2860V1_1737) pduU 1846789..1847139 (-) 351 WP_000211394.1 propanediol utilization microcompartment protein PduU -

Sequence

Protein


Download         Length: 475 a.a.        Molecular weight: 54487.77 Da        Isoelectric Point: 5.4666

>NTDB_id=1037028 LQ120_RS08870 WP_000980629.1 1841089..1842516(-) (sbcB) [Escherichia coli isolate 602]
MMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITGITPQEAWAKGEN
EAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDG
LPSFRLEHLTKANGIEHSNAHDAMADVYATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWR
GNTSWVAPLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKTDLGDNAAVPVKLVHINKCPVLAQANTLRPEDA
DRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPSDNVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVD
KRIEKLLFNYRARNFPGTLDYAEQQRWLEHRRQVFTPEFLQGYADELQMLAQQYADNKEKVALLKALWQYAEEIV

Nucleotide


Download         Length: 1428 bp        

>NTDB_id=1037028 LQ120_RS08870 WP_000980629.1 1841089..1842516(-) (sbcB) [Escherichia coli isolate 602]
ATGATGAATGACGGTAAGCAACAATCTACCTTTTTGTTTCACGATTACGAAACCTTTGGCACGCACCCCGCGTTAGATCG
CCCTGCACAGTTCGCAGCCATTCGCACCGATAGCGAATTCAATGTCATCGGCGAACCCGAAGTCTTTTACTGCAAGCCCG
CGGATGACTATTTACCCCAGCCTGGAGCAGTATTAATTACCGGTATTACCCCGCAGGAAGCATGGGCGAAAGGAGAAAAC
GAAGCCGCGTTTGCCGCCCGTATTCACTCGCTTTTTACCGTACCGAAGACCTGTATTCTGGGCTACAACAATGTGCGTTT
CGACGACGAAGTCACACGCAACGTTTTTTATCGTAATTTCTACGATCCTTACGCCTGGAGCTGGCAGCATGATAACTCGC
GCTGGGATTTGTTGGATGTTATGCGTGCCTGTTATGCCCTGCGCCCGGAAGGAATAAACTGGCCTGAAAATGATGACGGT
CTACCGAGCTTTCGCCTTGAGCATTTAACCAAAGCGAATGGTATTGAACATAGCAACGCCCACGATGCGATGGCTGATGT
GTACGCCACTATTGCGATGGCAAAGCTGGTAAAAACGCGTCAGCCACGCCTGTTTGATTATCTCTTTACCCATCGTAATA
AACACAAACTGATGGCGTTGATTGATGTTCCGCAGATGAAACCCCTGGTGCACGTTTCCGGAATGTTTGGAGCATGGCGC
GGCAATACCAGCTGGGTGGCACCGCTGGCGTGGCATCCTGAAAATCGCAATGCCGTAATTATGGTGGATTTGGCAGGAGA
CATTTCGCCATTACTGGAACTGGATAGCGACACATTGCGCGAGCGTTTATATACCGCAAAAACCGATCTTGGCGATAACG
CCGCCGTTCCGGTTAAGCTGGTGCATATCAATAAATGTCCGGTGCTGGCCCAGGCGAATACGCTACGCCCGGAAGATGCC
GACCGACTGGGAATTAATCGTCAGCATTGCCTCGATAACCTGAAAATTCTGCGTGAAAATCCGCAAGTGCGCGAAAAAGT
GGTGGCGATATTCGCGGAAGCCGAACCGTTTACGCCTTCAGATAACGTGGATGCACAGCTTTATAACGGCTTTTTCAGTG
ACGCCGATCGTGCAGCAATGAAAATTGTGCTGGAAACCGAGCCGCGTAATTTACCGGCACTGGATATCACTTTTGTCGAT
AAACGGATTGAAAAGCTGTTGTTCAATTATCGGGCGCGCAACTTCCCGGGGACGCTGGATTATGCCGAGCAGCAACGCTG
GCTGGAGCACCGCCGCCAGGTCTTCACGCCCGAGTTTTTACAAGGTTATGCAGATGAATTGCAGATGCTGGCACAACAAT
ATGCCGATAACAAAGAGAAAGTGGCGCTGTTAAAAGCGCTTTGGCAGTACGCGGAAGAGATCGTCTAA

Domains

Predicted by InterProScan.

Exonuclease C-terminal (ExoI_SH3)

(212-472)

Exonuclease (RNase_T)

(13-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

58.723

98.947

0.581

Multiple sequence alignment