Detailed information    

insolico Bioinformatically predicted

Overview

Name   subA/fin   Type   Machinery gene
Locus tag   KHU1_RS18445 Genome accession   NZ_CP007242
Coordinates   3837407..3837637 (+) Length   76 a.a.
NCBI ID   WP_004264650.1    Uniprot ID   A7Z0H7
Organism   Bacillus amyloliquefaciens KHG19     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3832407..3842637
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KHU1_RS18415 (KHU1_3594) ridA 3832595..3832975 (+) 381 WP_004264663.1 2-iminobutanoate/2-iminopropanoate deaminase -
  KHU1_RS18420 (KHU1_3595) spoVG 3833171..3833464 (+) 294 WP_004264660.1 septation regulator SpoVG -
  KHU1_RS18425 (KHU1_3596) glmU 3833656..3835026 (+) 1371 WP_004264658.1 bifunctional UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase GlmU -
  KHU1_RS18430 (KHU1_3597) - 3835048..3836001 (+) 954 WP_007409928.1 ribose-phosphate diphosphokinase -
  KHU1_RS18435 (KHU1_3598) - 3836086..3836694 (+) 609 WP_014416724.1 50S ribosomal protein L25/general stress protein Ctc -
  KHU1_RS18440 (KHU1_3599) pth 3836779..3837345 (+) 567 WP_015239025.1 aminoacyl-tRNA hydrolase -
  KHU1_RS18445 (KHU1_3600) subA/fin 3837407..3837637 (+) 231 WP_004264650.1 anti-sigma-F factor Fin family protein Machinery gene
  KHU1_RS18450 (KHU1_3601) mfd 3837707..3841240 (+) 3534 WP_007409931.1 transcription-repair coupling factor -
  KHU1_RS18455 (KHU1_3602) spoVT 3841377..3841913 (+) 537 WP_004264646.1 stage V sporulation protein T -

Sequence

Protein


Download         Length: 76 a.a.        Molecular weight: 8899.87 Da        Isoelectric Point: 5.8002

>NTDB_id=103702 KHU1_RS18445 WP_004264650.1 3837407..3837637(+) (subA/fin) [Bacillus amyloliquefaciens KHG19]
MALHYFCRHCGFKVGSLEYSTVPTQSLGFQHLTNEERNDMISYKDNGDVHVLTICEDCQEALERNPHYHEHNTFIQ

Nucleotide


Download         Length: 231 bp        

>NTDB_id=103702 KHU1_RS18445 WP_004264650.1 3837407..3837637(+) (subA/fin) [Bacillus amyloliquefaciens KHG19]
ATGGCTTTGCATTATTTCTGCCGCCACTGCGGCTTTAAGGTAGGGAGCCTGGAATATTCGACGGTGCCGACACAGTCACT
TGGATTTCAGCACTTAACAAATGAGGAAAGAAACGATATGATTTCATATAAAGACAATGGAGATGTCCATGTTCTTACAA
TTTGTGAAGACTGCCAAGAGGCGCTGGAGCGCAATCCGCACTACCATGAACACAACACATTTATTCAATAA

Domains

Predicted by InterProScan.

Anti-sigma-F factor Fin (Fin)

(1-76)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A7Z0H7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  subA/fin Bacillus subtilis subsp. subtilis str. 168

86.842

100

0.868

Multiple sequence alignment