Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   LQ149_RS22660 Genome accession   NZ_OW968011
Coordinates   4736970..4737446 (+) Length   158 a.a.
NCBI ID   WP_001186726.1    Uniprot ID   -
Organism   Escherichia coli isolate 58     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4731970..4742446
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LQ149_RS22635 (AI2894V1_4360) - 4732100..4734616 (+) 2517 WP_001716392.1 hypothetical protein -
  LQ149_RS22640 (AI2894V1_4361) - 4734692..4735147 (+) 456 WP_001504120.1 IrmA family protein -
  LQ149_RS22645 (AI2894V1_4362) - 4735226..4735459 (+) 234 WP_001119717.1 DUF905 family protein -
  LQ149_RS22650 (AI2894V1_4363) - 4735559..4736377 (+) 819 WP_001234732.1 DUF932 domain-containing protein -
  LQ149_RS22655 (AI2894V1_4364) - 4736469..4736954 (+) 486 WP_000214307.1 antirestriction protein -
  LQ149_RS22660 (AI2894V1_4365) radC 4736970..4737446 (+) 477 WP_001186726.1 RadC family protein Machinery gene
  LQ149_RS22665 (AI2894V1_4366) - 4737509..4737730 (+) 222 WP_000692298.1 DUF987 domain-containing protein -
  LQ149_RS22670 (AI2894V1_4367) - 4737749..4738432 (+) 684 WP_000086768.1 hypothetical protein -
  LQ149_RS22675 (AI2894V1_4368) - 4738443..4738823 (+) 381 WP_001285602.1 type IV toxin-antitoxin system YeeU family antitoxin -
  LQ149_RS22680 (AI2894V1_4369) - 4738904..4739287 (+) 384 WP_000854686.1 TA system toxin CbtA family protein -
  LQ149_RS22685 (AI2894V1_4370) - 4739284..4739772 (+) 489 WP_001054233.1 DUF5983 family protein -
  LQ149_RS22690 (AI2894V1_4371) - 4739789..4739986 (+) 198 WP_000839253.1 DUF957 domain-containing protein -
  LQ149_RS22695 (AI2894V1_4372) - 4740071..4740913 (+) 843 WP_074767346.1 DUF4942 domain-containing protein -
  LQ149_RS22705 (AI2894V1_4373) infA 4741404..4741622 (-) 219 WP_001040187.1 translation initiation factor IF-1 -

Sequence

Protein


Download         Length: 158 a.a.        Molecular weight: 17673.32 Da        Isoelectric Point: 7.2020

>NTDB_id=1036993 LQ149_RS22660 WP_001186726.1 4736970..4737446(+) (radC) [Escherichia coli isolate 58]
MQQLSFLPGEMTPGERSLILRALKTLDRHLHEPGVAFTSTRAAREWLILNMAGLEREEFRVLYLNNQNQLIAGETLFTGT
INRTEVHPREVIKRALYHNAAAVVLAHNHPSGEVTPSKADRLITERLVQALGLVDIRVPDHLIVGGNQVFSFAEHGLL

Nucleotide


Download         Length: 477 bp        

>NTDB_id=1036993 LQ149_RS22660 WP_001186726.1 4736970..4737446(+) (radC) [Escherichia coli isolate 58]
ATGCAACAGCTTTCCTTTCTGCCCGGAGAGATGACGCCCGGCGAGCGCAGTCTCATTCTGCGGGCCCTGAAAACTCTGGA
CCGCCATCTTCATGAACCCGGCGTGGCCTTCACCTCCACCCGTGCGGCACGGGAATGGCTGATTCTGAACATGGCGGGAC
TGGAGCGTGAAGAATTCCGGGTGCTGTATCTGAATAACCAGAATCAACTGATTGCCGGTGAAACCCTCTTCACCGGCACC
ATCAACCGCACGGAAGTCCATCCCCGGGAAGTGATTAAACGCGCCCTGTACCACAATGCCGCTGCCGTGGTGCTGGCGCA
CAATCACCCGTCCGGTGAAGTCACACCCAGCAAGGCAGACCGCCTTATCACGGAACGTCTGGTACAGGCACTGGGCCTGG
TGGATATCCGGGTGCCGGACCATCTGATAGTCGGTGGCAACCAGGTTTTCTCCTTTGCCGAACATGGTCTGCTTTAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(38-157)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

54.867

71.519

0.392

Multiple sequence alignment