Detailed information    

insolico Bioinformatically predicted

Overview

Name   spo0J   Type   Regulator
Locus tag   KHU1_RS18090 Genome accession   NZ_CP007242
Coordinates   3766973..3767824 (-) Length   283 a.a.
NCBI ID   WP_004392966.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens KHG19     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 3761973..3772824
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KHU1_RS18065 (KHU1_3531) - 3762141..3764144 (-) 2004 WP_042635676.1 molybdopterin-dependent oxidoreductase -
  KHU1_RS18070 (KHU1_3532) - 3764191..3764397 (-) 207 WP_004392973.1 DUF951 domain-containing protein -
  KHU1_RS18075 (KHU1_3533) - 3764483..3765508 (-) 1026 WP_088005468.1 hypothetical protein -
  KHU1_RS18080 (KHU1_3534) - 3765652..3766155 (+) 504 WP_042635677.1 GNAT family N-acetyltransferase -
  KHU1_RS18085 (KHU1_3535) yyaC 3766329..3766943 (+) 615 WP_004392969.1 spore protease YyaC -
  KHU1_RS18090 (KHU1_3536) spo0J 3766973..3767824 (-) 852 WP_004392966.1 ParB/RepB/Spo0J family partition protein Regulator
  KHU1_RS18095 (KHU1_3537) soj 3767817..3768578 (-) 762 WP_007409899.1 sporulation initiation inhibitor protein Soj -
  KHU1_RS18100 (KHU1_3538) noc 3768877..3769728 (-) 852 WP_007409900.1 nucleoid occlusion protein -
  KHU1_RS18105 (KHU1_3539) rsmG 3769850..3770569 (-) 720 WP_007409901.1 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG -
  KHU1_RS18110 (KHU1_3540) mnmG 3770583..3772469 (-) 1887 WP_007615086.1 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG -

Sequence

Protein


Download         Length: 283 a.a.        Molecular weight: 32351.29 Da        Isoelectric Point: 8.3471

>NTDB_id=103697 KHU1_RS18090 WP_004392966.1 3766973..3767824(-) (spo0J) [Bacillus amyloliquefaciens KHG19]
MAKGGLGKGINALFNQVDLSEETVEEIKISDLRPNPYQPRKQFDDESLAELKESIIQHGILQPIIVRKSLKGYDIVAGER
RYRAAKLAGKETVPAIVRDLSESLMREIALLENLQREDLSPLEEALAYDSLLKHLDLTQEQLAKRLGKSRPHIANHLRLL
TLPESIQNLIAEGTLSMGHGRTLLGLKNKNKLEPLVKKVVEEQLNVRQLEQLIQQLNNNVPRETKKKEPVQDVVLKERES
YLQNYFGTTVNIKRQKKKGKIEIEFFSNEDLERILELLSEREA

Nucleotide


Download         Length: 852 bp        

>NTDB_id=103697 KHU1_RS18090 WP_004392966.1 3766973..3767824(-) (spo0J) [Bacillus amyloliquefaciens KHG19]
ATGGCTAAAGGCGGGCTCGGAAAAGGGATTAACGCGTTGTTTAATCAGGTTGATTTGTCTGAAGAGACAGTGGAAGAGAT
TAAAATCAGTGATTTGCGCCCCAATCCTTATCAGCCAAGAAAACAATTTGACGATGAGTCATTAGCTGAACTGAAGGAAT
CCATCATTCAGCATGGCATTCTTCAGCCCATTATCGTGAGAAAATCATTGAAGGGCTATGATATTGTAGCCGGCGAACGC
CGTTACCGCGCCGCAAAACTTGCCGGTAAAGAGACAGTGCCGGCCATCGTGCGGGATTTATCTGAATCGCTGATGCGGGA
AATCGCTCTTTTGGAAAACCTTCAGCGTGAAGACTTATCACCGCTTGAAGAAGCTCTGGCATATGACTCACTGCTGAAGC
ATTTGGATTTAACCCAGGAACAGCTCGCTAAACGGCTCGGAAAAAGCAGGCCTCATATTGCCAACCATTTAAGACTGCTG
ACGCTGCCGGAAAGCATCCAGAACCTCATTGCAGAAGGTACGTTATCCATGGGACACGGCAGAACCTTGCTTGGTTTGAA
AAATAAAAACAAGCTTGAACCGCTTGTGAAGAAAGTGGTTGAAGAACAGCTGAACGTCCGTCAGCTTGAGCAGCTGATTC
AGCAGTTAAACAACAATGTTCCACGTGAAACAAAGAAAAAAGAACCTGTCCAAGATGTGGTGTTAAAAGAGCGGGAATCG
TATTTGCAAAATTACTTCGGAACAACAGTAAATATAAAGAGACAAAAGAAAAAAGGGAAGATTGAGATTGAGTTTTTCTC
AAATGAAGATCTTGAACGTATCCTAGAACTATTGTCTGAAAGAGAAGCGTAA

Domains

Predicted by InterProScan.

ParB/Sulfiredoxin domain (ParB_N)

(25-113)

HTH domain found in ParB protein (HTH_ParB)

(164-215)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  spo0J Streptococcus mutans UA159

41.538

91.873

0.382

Multiple sequence alignment