Detailed information    

insolico Bioinformatically predicted

Overview

Name   braR   Type   Regulator
Locus tag   KHU1_RS17380 Genome accession   NZ_CP007242
Coordinates   3622894..3623583 (-) Length   229 a.a.
NCBI ID   WP_004393241.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens KHG19     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 3617894..3628583
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KHU1_RS17360 (KHU1_3396) - 3618799..3619146 (-) 348 WP_004393256.1 YxeA family protein -
  KHU1_RS17365 (KHU1_3397) yxdM 3619160..3621028 (-) 1869 WP_007407826.1 ABC transporter permease YxdM -
  KHU1_RS17370 (KHU1_3398) yxdL 3621003..3621776 (-) 774 WP_020954377.1 ABC transporter ATP-binding protein YxdL -
  KHU1_RS17375 (KHU1_3399) yxdK 3621920..3622897 (-) 978 WP_007407828.1 two-component system sensor histidine kinase YxdK -
  KHU1_RS17380 (KHU1_3400) braR 3622894..3623583 (-) 690 WP_004393241.1 two-component system response regulator YxdJ Regulator
  KHU1_RS17385 (KHU1_3401) - 3623733..3625172 (-) 1440 WP_042635631.1 sensor histidine kinase -
  KHU1_RS17390 (KHU1_3402) - 3625169..3625891 (-) 723 WP_031379171.1 response regulator transcription factor -
  KHU1_RS17395 (KHU1_3403) - 3626134..3627045 (+) 912 WP_042635632.1 ABC transporter ATP-binding protein -
  KHU1_RS17400 (KHU1_3404) - 3627042..3627800 (+) 759 WP_012118838.1 ABC transporter permease -
  KHU1_RS17405 (KHU1_3405) - 3627818..3628552 (+) 735 WP_012118839.1 ABC transporter permease -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 26545.26 Da        Isoelectric Point: 4.8564

>NTDB_id=103690 KHU1_RS17380 WP_004393241.1 3622894..3623583(-) (braR) [Bacillus amyloliquefaciens KHG19]
MNKIMIVEDSEDIRGLLQNYLEKYGYQTVAAADFTAVLDVFLREKPDVVLLDINLPSYDGYYWCRQIRQHSTSPIIFISA
RSGEMDQVMAIENGGDDYIEKPFSYDIVLAKIKSQIRRAYGEYAAKQGEKVVEYAGVQLFVERFELRFQDEKSELSKKES
KLLEVLLERGEKVTGRDRLMEKTWDTDIFVDDNTLNVYITRLRKKLRELNAPVSIESVRGEGYQLRALS

Nucleotide


Download         Length: 690 bp        

>NTDB_id=103690 KHU1_RS17380 WP_004393241.1 3622894..3623583(-) (braR) [Bacillus amyloliquefaciens KHG19]
ATGAATAAAATCATGATTGTGGAAGATAGTGAAGACATTCGCGGACTATTGCAGAATTACCTTGAAAAATACGGATATCA
AACCGTGGCCGCCGCGGATTTCACGGCTGTTCTTGATGTCTTTTTGCGGGAAAAGCCTGATGTGGTGCTGCTTGATATCA
ACCTGCCGTCTTATGACGGCTATTATTGGTGCCGCCAGATCCGCCAGCATTCTACAAGCCCGATCATTTTCATCTCAGCC
AGAAGCGGGGAAATGGATCAGGTGATGGCGATTGAAAACGGCGGAGATGATTATATCGAAAAACCGTTTTCCTACGATAT
TGTGCTGGCGAAAATCAAAAGCCAGATCCGCAGGGCATACGGAGAGTACGCCGCCAAGCAGGGTGAGAAAGTGGTTGAAT
ATGCCGGTGTGCAGCTCTTTGTGGAACGGTTTGAACTGCGCTTTCAGGACGAAAAAAGCGAGCTTTCTAAAAAAGAAAGC
AAGCTTTTGGAAGTGCTGCTGGAGCGGGGAGAAAAGGTGACGGGAAGAGACCGGCTCATGGAAAAAACGTGGGACACCGA
TATTTTCGTCGATGATAATACGCTTAACGTGTATATCACGCGGCTCAGAAAAAAATTGCGGGAGCTGAACGCGCCTGTTT
CCATTGAATCGGTGCGGGGCGAAGGCTACCAGCTGAGGGCGCTGTCATGA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(4-112)

Transcriptional regulatory protein, C terminal (Trans_reg_C)

(151-225)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  braR Staphylococcus aureus N315

40.359

97.38

0.393

Multiple sequence alignment