Detailed information NTG0103685

Bioinformatically predicted

Overview

• Name: rapC
• Type: Regulator
• Locus tag: KHU1_RS16015
• Genome accession: NZ_CP007242
• Coordinates: 3353311..3354441 (-)
• Length: 376 a.a.
• NCBI ID: WP_042635556.1
• Uniprot ID: -
• Organism: Bacillus amyloliquefaciens KHG19
• Function: inhibit the DNA-binding function of ComA (predicted from homology) Competence regulation

Genomic Context

Location: 3348311..3359441

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
KHU1_RS15985 (KHU1_3123)	-	3349152..3349556 (-)	405	WP_003151203.1	Rrf2 family transcriptional regulator	-
KHU1_RS15990 (KHU1_3124)	ureC	3349698..3351407 (-)	1710	WP_032869481.1	urease subunit alpha	-
KHU1_RS15995 (KHU1_3125)	ureB	3351404..3351778 (-)	375	WP_012118652.1	urease subunit beta	-
KHU1_RS16000 (KHU1_3126)	ureA	3351775..3352092 (-)	318	WP_007407581.1	urease subunit gamma	-
KHU1_RS16005 (KHU1_3127)	-	3352446..3352634 (-)	189	WP_012118653.1	CsbD family protein	-
KHU1_RS16010 (KHU1_3128)	-	3352709..3353188 (-)	480	WP_007407583.1	hypothetical protein	-
KHU1_RS16015 (KHU1_3129)	rapC	3353311..3354441 (-)	1131	WP_042635556.1	tetratricopeptide repeat protein	Regulator
KHU1_RS16020 (KHU1_3130)	moaA	3354632..3355657 (-)	1026	WP_020956465.1	GTP 3',8-cyclase MoaA	-
KHU1_RS16025 (KHU1_3131)	fdhD	3355675..3356463 (-)	789	WP_007407586.1	formate dehydrogenase accessory sulfurtransferase FdhD	-
KHU1_RS20085	-	3356558..3356722 (-)	165	WP_007407587.1	hypothetical protein	-
KHU1_RS16030 (KHU1_3132)	-	3356808..3357488 (-)	681	WP_020956466.1	VWA domain-containing protein	-
KHU1_RS16035 (KHU1_3133)	-	3357797..3358483 (-)	687	WP_007407590.1	VWA domain-containing protein	-

Sequence

Protein

• Length: 376 a.a.
• Molecular weight: 44939.05 Da
• Isoelectric Point: 5.3293

>NTDB_id=103685 KHU1_RS16015 WP_042635556.1 3353311..3354441(-) (rapC) [Bacillus amyloliquefaciens KHG19]
MTAYEIPSSQVGVKINKWYKHILAFQAADAIKLKEEIDEDIQRMEEDQLLLLYYQLISYRHHIMLDYVKPECTEQSQIQY
SELQKTIESTDSISGLSEYYFHLFRGMYEFDHNNYVAAISFYRKAEKLLSFVEDDIERAEFHFKMSEVFYVMKQTHFSMN
HGIQALDTYMKHDFYRVRRVQCHFVISGNYIDCKNYDKALEHLDEALRLSLLEGQPRLIGSSLYNLGNCYSEKRDLDEAA
RYFRKAVPVFEEHQLEQLPKALFSLTHTLFRLRDDQAALTYYERGVMIAKERGDRFSLEKYKFLQALYLESLNMDLIHEV
FDYMNEKSLYVYIEDFALEAAVYTSAHEQYKEAAYFYEKAIRMRENIQKEQCLYDI

Nucleotide

• Length: 1131 bp

>NTDB_id=103685 KHU1_RS16015 WP_042635556.1 3353311..3354441(-) (rapC) [Bacillus amyloliquefaciens KHG19]
ATGACCGCATACGAGATTCCGTCATCTCAAGTTGGAGTCAAGATCAACAAATGGTACAAGCACATTTTAGCGTTTCAAGC
GGCTGATGCCATAAAGCTGAAAGAGGAAATTGATGAGGATATACAACGTATGGAGGAAGACCAGCTGCTGCTGTTATATT
ATCAGCTGATCAGCTACCGCCATCATATTATGCTTGATTACGTCAAGCCGGAATGCACCGAACAATCACAGATTCAGTAC
AGCGAGCTGCAAAAGACGATCGAAAGCACGGACAGCATATCAGGACTGTCTGAGTATTATTTCCATTTGTTCAGAGGAAT
GTATGAATTCGATCACAATAACTATGTTGCGGCTATTTCTTTTTACCGGAAAGCGGAAAAACTCCTTTCATTTGTCGAGG
ATGATATAGAGAGGGCGGAATTCCATTTCAAGATGTCTGAAGTGTTTTATGTCATGAAGCAGACTCATTTTTCCATGAAT
CACGGGATTCAGGCGCTGGATACGTATATGAAACACGATTTCTACAGAGTGCGGAGAGTTCAATGCCATTTCGTCATCTC
AGGAAACTACATCGACTGCAAAAACTACGACAAAGCGCTTGAGCATTTAGACGAAGCCCTCCGCCTTTCTTTGCTTGAAG
GACAGCCCCGCCTGATCGGGTCTTCGCTTTACAATCTGGGGAATTGTTATTCTGAAAAGCGGGATCTGGATGAAGCGGCC
CGGTACTTTAGAAAAGCGGTTCCCGTTTTTGAAGAGCATCAGCTTGAACAGCTTCCGAAGGCGCTGTTCAGCTTAACGCA
CACCCTTTTCAGGCTGCGTGATGACCAAGCGGCCCTTACCTATTATGAAAGAGGGGTTATGATCGCGAAAGAACGGGGCG
ACCGATTCAGTTTAGAGAAGTATAAGTTTTTACAAGCGCTTTATTTGGAGTCACTCAATATGGATTTAATCCATGAAGTG
TTTGACTATATGAATGAAAAATCGCTGTATGTGTATATTGAAGATTTCGCCTTGGAGGCCGCCGTTTACACAAGCGCACA
TGAGCAATATAAAGAAGCGGCGTATTTTTATGAAAAAGCGATTCGCATGAGAGAAAACATTCAAAAAGAACAATGTTTAT
ACGATATATAA

Domains

Predicted by InterProScan.

• Tetratricopeptide repeat (TPR_12) (192-251)

• response regulator aspartate phosphatase H, N terminal (RapH_N) (6-66)

• Tetratricopeptide repeat (TPR_7) (261-285)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rapC	Bacillus subtilis subsp. subtilis str. 168	41.579	100	0.42
rapF	Bacillus subtilis subsp. subtilis str. 168	40	99.734	0.399