Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   LQ127_RS14245 Genome accession   NZ_OW967966
Coordinates   2918570..2919022 (-) Length   150 a.a.
NCBI ID   WP_022645566.1    Uniprot ID   -
Organism   Escherichia coli isolate 648     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2913570..2924022
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LQ127_RS14220 (AI2858V1_2776) ltrA 2914281..2915789 (+) 1509 WP_001189123.1 group II intron reverse transcriptase/maturase -
  LQ127_RS14225 (AI2858V1_REPA000000182) - 2915870..2916358 (+) 489 Protein_2806 IS3 family transposase -
  LQ127_RS14230 (AI2858V1_2779) - 2916572..2916769 (-) 198 WP_022645568.1 AlpA family transcriptional regulator -
  LQ127_RS14235 (AI2858V1_2780) - 2916993..2917607 (+) 615 WP_016248782.1 hypothetical protein -
  LQ127_RS14240 (AI2858V1_2781) - 2917594..2918523 (-) 930 WP_023908767.1 site-specific integrase -
  LQ127_RS14245 (AI2858V1_2782) radC 2918570..2919022 (-) 453 WP_022645566.1 DNA repair protein RadC Machinery gene
  LQ127_RS14250 (AI2858V1_2783) - 2919024..2919485 (-) 462 WP_032140166.1 hypothetical protein -
  LQ127_RS14255 (AI2858V1_2784) - 2919605..2919997 (-) 393 WP_023908768.1 DUF2787 family protein -
  LQ127_RS14260 (AI2858V1_2785) - 2920259..2920633 (-) 375 WP_022645563.1 helix-turn-helix transcriptional regulator -
  LQ127_RS14265 (AI2858V1_2786) - 2920823..2921350 (+) 528 WP_022645562.1 hypothetical protein -
  LQ127_RS14270 (AI2858V1_2787) - 2921365..2921724 (+) 360 WP_022645561.1 hypothetical protein -
  LQ127_RS14275 (AI2858V1_2788) - 2921755..2922090 (+) 336 WP_022645560.1 hypothetical protein -

Sequence

Protein


Download         Length: 150 a.a.        Molecular weight: 17251.98 Da        Isoelectric Point: 6.4874

>NTDB_id=1036799 LQ127_RS14245 WP_022645566.1 2918570..2919022(-) (radC) [Escherichia coli isolate 648]
MTMFTQRETRILDQARDIISRYYQRGVQLCSPDDVRRCVMVELAPLEHEEFGIILLDNQNQLLHREILFRGTLNSVSVHP
REVIKRVLKNNAAAVILVHNHPSGEPEPSRCDIQLTKKLQELLEMLDVRLLDHFIVAGTETVSMAERGLV

Nucleotide


Download         Length: 453 bp        

>NTDB_id=1036799 LQ127_RS14245 WP_022645566.1 2918570..2919022(-) (radC) [Escherichia coli isolate 648]
ATGACCATGTTTACCCAGCGTGAAACCCGTATCCTTGACCAGGCGCGTGACATTATCAGCCGGTACTACCAGCGTGGCGT
TCAGCTCTGTTCCCCTGATGATGTTCGGCGGTGCGTAATGGTTGAGCTGGCACCGCTTGAACATGAAGAGTTTGGCATCA
TCCTGCTCGATAATCAGAATCAGCTGCTGCACCGCGAAATCCTGTTCAGGGGTACGTTAAACTCGGTCAGCGTTCACCCC
CGTGAAGTTATTAAGCGTGTACTGAAAAATAACGCCGCCGCAGTCATCCTTGTCCACAACCACCCCAGCGGCGAGCCTGA
ACCCAGCCGGTGTGACATCCAGTTGACCAAAAAGCTTCAGGAGCTGCTGGAAATGCTGGATGTCCGGTTGCTTGACCACT
TTATCGTGGCGGGGACTGAAACGGTGTCGATGGCTGAACGGGGGCTGGTGTGA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(31-149)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

46.218

79.333

0.367

Multiple sequence alignment