Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   LQ127_RS00315 Genome accession   NZ_OW967966
Coordinates   72404..72880 (-) Length   158 a.a.
NCBI ID   WP_001747787.1    Uniprot ID   -
Organism   Escherichia coli isolate 648     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 67404..77880
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LQ127_RS00275 (AI2858V1_0054) setC 67634..68818 (-) 1185 WP_001172866.1 sugar efflux transporter -
  LQ127_RS00280 rhuM 69217..69378 (-) 162 Protein_56 RhuM family protein -
  LQ127_RS00285 (AI2858V1_0055) - 69613..70461 (-) 849 WP_162676397.1 DUF4942 domain-containing protein -
  LQ127_RS00290 (AI2858V1_0056) - 70546..70743 (-) 198 WP_000839243.1 DUF957 domain-containing protein -
  LQ127_RS00295 (AI2858V1_0057) - 70755..71243 (-) 489 WP_038635538.1 DUF5983 family protein -
  LQ127_RS00300 (AI2858V1_0058) - 71240..71617 (-) 378 WP_038635535.1 TA system toxin CbtA family protein -
  LQ127_RS00305 (AI2858V1_0059) - 71664..72041 (-) 378 WP_089551113.1 type IV toxin-antitoxin system YeeU family antitoxin -
  LQ127_RS00310 (AI2858V1_0060) - 72120..72341 (-) 222 WP_000692309.1 DUF987 domain-containing protein -
  LQ127_RS00315 (AI2858V1_0061) radC 72404..72880 (-) 477 WP_001747787.1 RadC family protein Machinery gene
  LQ127_RS00320 (AI2858V1_0062) - 72896..73369 (-) 474 WP_000855059.1 antirestriction protein -
  LQ127_RS00325 (AI2858V1_0063) - 73711..74532 (-) 822 WP_230139066.1 DUF932 domain-containing protein -
  LQ127_RS00330 (AI2858V1_0064) - 74632..74805 (-) 174 WP_000088744.1 DUF905 family protein -
  LQ127_RS26080 - 74925..75380 (-) 456 Protein_67 hypothetical protein -
  LQ127_RS00345 (AI2858V1_0067) - 76272..77618 (+) 1347 WP_000483766.1 IS4-like element IS4 family transposase -

Sequence

Protein


Download         Length: 158 a.a.        Molecular weight: 17627.21 Da        Isoelectric Point: 7.2517

>NTDB_id=1036752 LQ127_RS00315 WP_001747787.1 72404..72880(-) (radC) [Escherichia coli isolate 648]
MQQLSFLPGNMTPGERSLIQRALKTLDRHLHEPGVAFTSTHAAREWLILNMAGLEREEFRVLYLNNQNQLIAGETLFTGT
INRTEVHPREVIKRALYHNAAAVVLAHNHPSGEVTPSKADRLITERLVQALGLVDIRVPDHLIVGGSQVFSFAEHGLL

Nucleotide


Download         Length: 477 bp        

>NTDB_id=1036752 LQ127_RS00315 WP_001747787.1 72404..72880(-) (radC) [Escherichia coli isolate 648]
ATGCAACAGCTTTCCTTTCTGCCCGGAAACATGACGCCCGGCGAGCGCAGCCTCATTCAGCGGGCCCTGAAAACCCTGGA
CCGCCATCTTCATGAACCCGGCGTGGCCTTCACCTCCACGCATGCGGCACGGGAATGGCTGATTCTGAACATGGCGGGAC
TGGAGCGTGAAGAATTCCGGGTGCTGTATCTGAATAACCAGAATCAGCTGATTGCCGGTGAAACCCTCTTCACCGGCACC
ATCAACCGCACGGAAGTCCATCCCCGTGAAGTGATTAAACGCGCCCTGTATCACAATGCCGCTGCTGTGGTGCTGGCACA
CAATCACCCGTCCGGTGAAGTCACACCCAGTAAGGCAGACCGGCTTATCACCGAACGTCTGGTACAGGCACTGGGCCTGG
TGGATATCCGGGTGCCGGACCATCTGATAGTCGGTGGCAGCCAGGTTTTCTCCTTTGCCGAACATGGTCTGCTTTAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(38-157)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

55.752

71.519

0.399

Multiple sequence alignment