Detailed information    

insolico Bioinformatically predicted

Overview


Name   amiE   Type   Regulator
Locus tag   ACB350_RS01430 Genome accession   NZ_CP166999
Coordinates   269930..271000 (+) Length   356 a.a.
NCBI ID   WP_371396436.1    Uniprot ID   -
Organism   Streptococcus pyogenes strain Isolate 34     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context


Location: 264930..276000
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACB350_RS01415 (ACB350_01415) amiA 265458..267428 (+) 1971 WP_030127656.1 peptide ABC transporter substrate-binding protein Regulator
  ACB350_RS01420 (ACB350_01420) amiC 267493..268995 (+) 1503 WP_371396434.1 ABC transporter permease Regulator
  ACB350_RS01425 (ACB350_01425) amiD 268995..269921 (+) 927 WP_002986004.1 oligopeptide ABC transporter permease OppC Regulator
  ACB350_RS01430 (ACB350_01430) amiE 269930..271000 (+) 1071 WP_371396436.1 ABC transporter ATP-binding protein Regulator
  ACB350_RS01435 (ACB350_01435) amiF 270993..271916 (+) 924 WP_002986000.1 ABC transporter ATP-binding protein Regulator
  ACB350_RS01440 (ACB350_01440) - 271901..272038 (-) 138 Protein_236 IS3 family transposase -
  ACB350_RS01445 (ACB350_01445) - 272065..272244 (-) 180 WP_100215900.1 transposase -

Sequence


Protein


Download         Length: 356 a.a.        Molecular weight: 39631.71 Da        Isoelectric Point: 5.8939

>NTDB_id=1036745 ACB350_RS01430 WP_371396436.1 269930..271000(+) (amiE) [Streptococcus pyogenes strain Isolate 34]
MTKENNVILTAKDVVVEFDVRDRVLTAIRNVSLELVEGEVLAFVGESGSGKSVLTKTFTGMLESNGRIANGSIVYRGQEL
TDLKTNKEWAKIRGSKIATIFQDPMTSLSPIKTIGSQITEVIIKHQKVSHAKAKEMALDYMNKVGIPNAKKRFEDYPFEY
SGGMRQRIVIAIALACRPDILICDEPTTALDVTIQAQIVELLKSLQREYHFTIIFITHDLGVVASIADKVAVMYAGEIVE
FGTVEEIFYDPRHPYTWSLLSSLPQLADESGELYAIPGTPPSLYSPIIGDAFALRSEYAMVLDFEKAPPAINVSETHWAK
TWLLHPEAPKVQKPEVIQDLHQKILRKMSQQEGGNV

Nucleotide


Download         Length: 1071 bp        

>NTDB_id=1036745 ACB350_RS01430 WP_371396436.1 269930..271000(+) (amiE) [Streptococcus pyogenes strain Isolate 34]
ATGACAAAAGAAAATAATGTAATCTTAACTGCCAAAGATGTGGTGGTAGAATTTGATGTGCGTGATCGTGTTTTAACAGC
TATCCGTAACGTCTCACTGGAACTTGTTGAAGGAGAAGTCCTTGCTTTTGTAGGGGAATCAGGCTCAGGTAAATCTGTTT
TAACAAAGACCTTTACAGGGATGTTGGAGTCTAATGGACGCATTGCTAATGGTTCAATTGTCTATCGTGGGCAAGAATTG
ACAGATTTAAAAACAAATAAAGAGTGGGCAAAGATTCGCGGCTCAAAAATCGCAACGATTTTCCAAGACCCAATGACCAG
TCTTAGTCCCATTAAAACTATTGGTAGCCAAATCACAGAAGTGATTATTAAGCACCAAAAAGTAAGTCATGCCAAAGCTA
AAGAAATGGCCCTTGATTACATGAATAAAGTGGGTATCCCAAATGCCAAAAAACGCTTTGAAGATTACCCATTTGAGTAT
TCAGGAGGAATGCGTCAACGTATTGTTATCGCTATTGCTTTAGCTTGTCGCCCAGATATTCTTATCTGTGATGAGCCAAC
AACAGCCCTTGATGTGACTATTCAAGCTCAAATCGTTGAGTTATTGAAGTCGCTTCAACGAGAATATCATTTCACCATTA
TCTTTATTACGCACGATTTAGGTGTTGTGGCAAGCATTGCAGATAAAGTGGCTGTCATGTATGCAGGAGAAATTGTTGAA
TTTGGAACAGTCGAAGAGATTTTCTATGATCCAAGACACCCCTATACATGGAGTTTGCTGTCTAGCTTACCGCAGTTGGC
AGATGAATCTGGTGAACTTTACGCTATTCCAGGAACGCCTCCATCACTTTATTCACCAATTATCGGAGATGCCTTTGCAC
TTCGCTCAGAATATGCTATGGTTTTAGACTTTGAAAAAGCACCTCCGGCGATTAACGTATCTGAGACTCATTGGGCCAAA
ACATGGCTTTTACACCCAGAGGCTCCAAAAGTTCAAAAACCAGAAGTCATTCAAGATTTGCATCAAAAAATCTTAAGGAA
AATGTCACAACAGGAGGGAGGAAATGTCTGA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiE Streptococcus salivarius strain HSISS4

76.389

100

0.772

  amiE Streptococcus thermophilus LMG 18311

75.278

100

0.761

  amiE Streptococcus thermophilus LMD-9

75.278

100

0.761

  oppD Streptococcus mutans UA159

56.677

94.663

0.537


Multiple sequence alignment