Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   LQ148_RS08590 Genome accession   NZ_OW967795
Coordinates   1824889..1825365 (-) Length   158 a.a.
NCBI ID   WP_001186200.1    Uniprot ID   -
Organism   Escherichia coli isolate 538     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1819889..1830365
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LQ148_RS08540 (AI2890V1_1654) yeeA 1820447..1821505 (+) 1059 WP_021576020.1 FUSC family protein -
  LQ148_RS08545 (AI2890V1_1655) tmaR 1821677..1822006 (+) 330 WP_000450409.1 DUF496 family protein -
  LQ148_RS08550 - 1822107..1822289 (-) 183 WP_001296208.1 EutP/PduV family microcompartment system protein -
  LQ148_RS08555 (AI2890V1_REPA000000035) - 1822343..1822489 (+) 147 Protein_1675 transposase domain-containing protein -
  LQ148_RS08560 - 1822778..1822858 (-) 81 Protein_1676 hypothetical protein -
  LQ148_RS08565 (AI2890V1_1656) yeeW 1822904..1823098 (-) 195 WP_000988600.1 DUF5983 family protein -
  LQ148_RS08570 (AI2890V1_1657) cbtA 1823095..1823469 (-) 375 WP_000854815.1 type IV toxin-antitoxin system cytoskeleton-binding toxin CbtA -
  LQ148_RS08575 (AI2890V1_1658) cbeA 1823558..1823926 (-) 369 WP_001280918.1 type IV toxin-antitoxin system YeeU family antitoxin -
  LQ148_RS08580 (AI2890V1_1659) - 1823942..1824586 (-) 645 WP_000086752.1 hypothetical protein -
  LQ148_RS08585 (AI2890V1_1660) yeeT 1824605..1824826 (-) 222 WP_000692345.1 DUF987 domain-containing protein -
  LQ148_RS08590 (AI2890V1_1661) radC 1824889..1825365 (-) 477 WP_001186200.1 RadC family protein Machinery gene
  LQ148_RS08595 (AI2890V1_1662) - 1825381..1825854 (-) 474 WP_001542276.1 antirestriction protein -
  LQ148_RS08600 (AI2890V1_1663) - 1825948..1826193 (-) 246 WP_001164966.1 hypothetical protein -
  LQ148_RS08605 (AI2890V1_1664) - 1826193..1827011 (-) 819 WP_001542275.1 DUF932 domain-containing protein -
  LQ148_RS08610 (AI2890V1_1665) - 1827232..1827642 (-) 411 WP_022296236.1 hypothetical protein -
  LQ148_RS08615 (AI2890V1_1666) - 1827658..1828335 (-) 678 WP_001362823.1 hypothetical protein -
  LQ148_RS08620 (AI2890V1_1667) - 1828471..1829541 (-) 1071 WP_000102631.1 patatin-like phospholipase family protein -

Sequence

Protein


Download         Length: 158 a.a.        Molecular weight: 17764.39 Da        Isoelectric Point: 7.6152

>NTDB_id=1036623 LQ148_RS08590 WP_001186200.1 1824889..1825365(-) (radC) [Escherichia coli isolate 538]
MQQISFLPGEMTTRERSLIQRALKTLDRHLHEPGVAFTSTRAAREWLILNMAGLEREEFRVLYLNNQNQLIAGETLFTGT
INRTEVHPREVIKRALYHNAAAVVLAHNHPSGEVTPSKADRLITERLVQALGLVDIRVPDHLIVGGSQVFSFAEHGLL

Nucleotide


Download         Length: 477 bp        

>NTDB_id=1036623 LQ148_RS08590 WP_001186200.1 1824889..1825365(-) (radC) [Escherichia coli isolate 538]
ATGCAACAGATTTCCTTTCTGCCCGGAGAAATGACAACCAGAGAGCGCAGCCTCATTCAGCGGGCCCTGAAAACCCTGGA
CCGCCATCTTCATGAACCCGGCGTGGCCTTCACCTCCACCCGTGCGGCACGGGAATGGCTGATTCTGAACATGGCGGGAC
TGGAGCGTGAAGAATTCCGGGTGCTGTATCTGAATAACCAGAATCAGCTGATTGCCGGTGAAACCCTCTTCACCGGCACC
ATCAACCGCACGGAAGTCCATCCCCGGGAAGTGATTAAACGCGCCCTGTATCACAATGCCGCAGCCGTGGTGCTGGCGCA
CAATCACCCGTCCGGTGAAGTCACACCCAGTAAGGCAGACCGGCTTATCACCGAACGTCTGGTACAGGCACTGGGCCTGG
TGGATATCCGGGTGCCGGACCATCTGATAGTCGGTGGCAGCCAGGTTTTCTCCTTTGCCGAACATGGTCTGCTTTAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(38-157)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

59.615

65.823

0.392