Detailed information NTG1036609

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: LQ148_RS05160
• Genome accession: NZ_OW967795
• Coordinates: 1082856..1083848 (+)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli isolate 538
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1077856..1088848

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
LQ148_RS05130 (AI2890V1_0997)	ispD	1077917..1078627 (+)	711	WP_022296752.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
LQ148_RS05135 (AI2890V1_0998)	ispF	1078627..1079106 (+)	480	WP_001219237.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
LQ148_RS05140 (AI2890V1_0999)	truD	1079103..1080152 (+)	1050	WP_022296753.1	tRNA pseudouridine(13) synthase TruD	-
LQ148_RS05145 (AI2890V1_1000)	surE	1080133..1080894 (+)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
LQ148_RS05150 (AI2890V1_1001)	pcm	1080888..1081514 (+)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
LQ148_RS05155 (AI2890V1_1002)	nlpD	1081699..1082793 (+)	1095	WP_306174120.1	murein hydrolase activator NlpD	-
LQ148_RS05160 (AI2890V1_1003)	rpoS	1082856..1083848 (+)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
LQ148_RS05165 (AI2890V1_1004)	-	1084026..1084577 (-)	552	WP_001683231.1	flavodoxin family protein	-
LQ148_RS05170 (AI2890V1_1005)	-	1084802..1085845 (+)	1044	WP_001161578.1	MBL fold metallo-hydrolase	-
LQ148_RS05175 (AI2890V1_1006)	ygbN	1085988..1087352 (-)	1365	WP_000104433.1	GntP family transporter	-
LQ148_RS05180 (AI2890V1_1007)	ygbM	1087442..1088218 (-)	777	WP_021576411.1	HPr family phosphocarrier protein	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=1036609 LQ148_RS05160 WP_000081550.1 1082856..1083848(+) (rpoS) [Escherichia coli isolate 538]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=1036609 LQ148_RS05160 WP_000081550.1 1082856..1083848(+) (rpoS) [Escherichia coli isolate 538]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGCTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTGATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATCGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCACGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAATGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTACTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715