Detailed information    

insolico Bioinformatically predicted

Overview

Name   cytR   Type   Regulator
Locus tag   LQ124_RS22840 Genome accession   NZ_OW967178
Coordinates   4807145..4808137 (-) Length   330 a.a.
NCBI ID   WP_000224470.1    Uniprot ID   P0ACQ1
Organism   Escherichia coli isolate 362     
Function   promote competence gene expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 4802145..4813137
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LQ124_RS22830 (AI2821V1_4374) yieP 4805037..4805729 (+) 693 WP_001131177.1 FadR/GntR family transcriptional regulator -
  LQ124_RS22835 (AI2821V1_4375) mdtD 4805752..4807179 (+) 1428 WP_001280852.1 multidrug transporter subunit MdtD -
  LQ124_RS22840 (AI2821V1_4376) cytR 4807145..4808137 (-) 993 WP_000224470.1 ribose operon transcriptional repressor RbsR Regulator
  LQ124_RS22845 (AI2821V1_4377) rbsK 4808141..4809070 (-) 930 WP_001590929.1 ribokinase -
  LQ124_RS22850 (AI2821V1_4378) rbsB 4809196..4810086 (-) 891 WP_001056273.1 ribose ABC transporter substrate-binding protein RbsB -
  LQ124_RS22855 (AI2821V1_4379) rbsC 4810111..4811076 (-) 966 WP_000211858.1 ribose ABC transporter permease -
  LQ124_RS22860 (AI2821V1_4380) rbsA 4811081..4812586 (-) 1506 WP_000387770.1 ribose ABC transporter ATP-binding protein RbsA -
  LQ124_RS22865 (AI2821V1_4381) rbsD 4812594..4813013 (-) 420 WP_001590928.1 D-ribose pyranase -

Sequence

Protein


Download         Length: 330 a.a.        Molecular weight: 36611.90 Da        Isoelectric Point: 5.2141

>NTDB_id=1036583 LQ124_RS22840 WP_000224470.1 4807145..4808137(-) (cytR) [Escherichia coli isolate 362]
MATMKDVARLAGVSTSTVSHVINKDRFVSEAITAKVEAAIKELNYAPSALARSLKLNQTHTIGMLITASTNPFYSELVRG
VERSCFERGYSLVLCNTEGDEQRMNRNLETLMQKRVDGLLLLCTETHQPSREIMQRYPTVPTVMMDWAPFDGDSDLIQDN
SLLGGDLATQYLIDKGHTRIACITGPLDKTPARLRLEGYRAAMKRAGLNIPDGYEVTGDFEFNGGFDAMRQLLSHPLRPQ
AVFTGNDAMAVGVYQALYQAELQVPQDIAVIGYDDIELASFMTPPLTTIHQPKDELGELAIDVLIHRITQPTLQQQRLQL
TPILMERGSA

Nucleotide


Download         Length: 993 bp        

>NTDB_id=1036583 LQ124_RS22840 WP_000224470.1 4807145..4808137(-) (cytR) [Escherichia coli isolate 362]
TTGGCTACAATGAAAGATGTTGCCCGCCTGGCGGGCGTTTCTACCTCAACAGTTTCTCACGTTATCAATAAAGATCGCTT
CGTCAGTGAAGCGATTACCGCCAAAGTTGAAGCGGCGATTAAAGAACTCAATTACGCGCCATCAGCTCTGGCCCGTAGCC
TCAAACTCAATCAAACACATACCATTGGCATGTTGATCACTGCCAGTACCAATCCTTTCTATTCAGAACTGGTGCGTGGC
GTTGAACGCAGCTGCTTCGAACGCGGTTATAGTCTCGTCCTTTGCAATACCGAAGGCGATGAACAGCGGATGAATCGCAA
TCTGGAAACGCTGATGCAAAAACGCGTTGATGGCTTGCTGTTACTGTGCACCGAAACGCATCAACCTTCGCGTGAAATCA
TGCAACGTTATCCGACAGTGCCTACTGTGATGATGGACTGGGCTCCGTTCGATGGTGACAGCGATCTTATTCAGGATAAC
TCGTTGCTGGGCGGAGACTTAGCAACGCAATATCTGATCGATAAAGGTCATACCCGTATCGCCTGTATTACCGGTCCGCT
GGATAAAACTCCGGCGCGCCTGCGGTTGGAAGGTTATCGGGCGGCGATGAAACGTGCGGGTCTCAACATTCCTGATGGCT
ATGAAGTCACTGGTGATTTTGAATTTAACGGCGGGTTTGACGCCATGCGCCAACTGTTATCACATCCGCTGCGTCCTCAG
GCCGTCTTTACCGGAAATGACGCTATGGCTGTTGGCGTTTACCAGGCGCTGTATCAGGCAGAGTTACAGGTTCCGCAGGA
TATCGCGGTGATTGGCTATGACGATATCGAACTGGCAAGCTTTATGACGCCACCATTAACCACTATCCACCAACCGAAAG
ATGAACTGGGGGAGCTGGCGATTGATGTACTCATCCATCGGATAACCCAGCCGACCCTTCAGCAACAACGATTACAACTT
ACTCCGATTCTGATGGAACGCGGTTCGGCTTAG

Domains

Predicted by InterProScan.

Periplasmic binding protein-like domain (Peripla_BP_3)

(169-329)

Bacterial regulatory proteins, lacI family (LacI)

(3-48)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0ACQ1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cytR Vibrio parahaemolyticus RIMD 2210633

37.048

100

0.373
  cytR Vibrio cholerae C6706

39.088

93.03

0.364