Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   ACA097_RS16140 Genome accession   NZ_CP166971
Coordinates   3444799..3446172 (+) Length   457 a.a.
NCBI ID   WP_043255496.1    Uniprot ID   -
Organism   Pseudomonas sp. QL9     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3439799..3451172
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACA097_RS16110 (ACA097_16105) - 3440305..3441429 (-) 1125 WP_371370530.1 methyltransferase -
  ACA097_RS16115 (ACA097_16110) - 3441557..3442333 (+) 777 WP_371364508.1 ferredoxin--NADP reductase -
  ACA097_RS16120 (ACA097_16115) mscL 3442389..3442790 (-) 402 WP_043255500.1 large-conductance mechanosensitive channel protein MscL -
  ACA097_RS16125 (ACA097_16120) - 3442976..3443218 (+) 243 WP_043255499.1 YdcH family protein -
  ACA097_RS16130 (ACA097_16125) - 3443295..3443543 (+) 249 WP_236658334.1 hypothetical protein -
  ACA097_RS16135 (ACA097_16130) - 3444206..3444619 (+) 414 WP_052355385.1 hypothetical protein -
  ACA097_RS16140 (ACA097_16135) radA 3444799..3446172 (+) 1374 WP_043255496.1 DNA repair protein RadA Machinery gene
  ACA097_RS16145 (ACA097_16140) - 3446247..3446621 (-) 375 WP_043255494.1 PilZ domain-containing protein -
  ACA097_RS16150 (ACA097_16145) - 3446875..3448941 (+) 2067 WP_371364512.1 carbon starvation CstA family protein -
  ACA097_RS16155 (ACA097_16150) - 3448957..3449163 (+) 207 WP_043255491.1 YbdD/YjiX family protein -
  ACA097_RS16160 (ACA097_16155) yjiA 3449238..3450221 (+) 984 WP_371364514.1 GTPase -
  ACA097_RS16165 (ACA097_16160) - 3450378..3451067 (-) 690 WP_371364516.1 GntR family transcriptional regulator -

Sequence

Protein


Download         Length: 457 a.a.        Molecular weight: 48943.34 Da        Isoelectric Point: 6.8307

>NTDB_id=1036480 ACA097_RS16140 WP_043255496.1 3444799..3446172(+) (radA) [Pseudomonas sp. QL9]
MAKAKRMYGCTECGATFPKWAGQCADCGAWNTLVETVIDNTPTGGTGSSGRGGWAGQQANIKTLAEVSIEEMPRFSTASN
ELDRVLGGGLVDGSVVLIGGDPGIGKSTILLQTLCNIATRLPALYVTGEESQQQVAMRARRLGLPEDKLKVMTETCIESI
ISTARQEQPKVMVIDSIQTIFTEQLQSAPGGVAQVRESAALLVRFAKQSGTAIFLVGHVTKEGALAGPRVLEHMVDTVLY
FEGESDGRLRLLRAVKNRFGAVNELGVFAMTDRGLKEVSNPSAIFLTRAQESVPGSVVMATWEGSRPMLVEVQALVDTSH
MANPRRVTLGLDQNRLAMLLAVLHRHGGIPTYDQDVFLNVVGGVKVLETASDLALMAAVMSSLRNRPLDHQLLVFGEVGL
SGEVRPVPSGQERLKEAAKHGFKRAIVPQGNAPKEAPAGLQVIPVTRLEQALDALFE

Nucleotide


Download         Length: 1374 bp        

>NTDB_id=1036480 ACA097_RS16140 WP_043255496.1 3444799..3446172(+) (radA) [Pseudomonas sp. QL9]
ATGGCCAAGGCCAAGCGTATGTATGGCTGCACCGAGTGCGGCGCCACCTTCCCCAAATGGGCCGGCCAGTGCGCCGACTG
TGGCGCCTGGAACACCCTGGTCGAAACCGTCATCGACAACACGCCCACCGGCGGCACCGGGAGTTCAGGGCGCGGCGGCT
GGGCCGGGCAGCAGGCCAACATCAAGACCCTGGCCGAAGTCAGCATCGAAGAGATGCCGCGCTTCTCCACGGCCTCCAAC
GAACTCGACCGCGTGCTCGGCGGCGGCCTGGTGGATGGCTCGGTGGTGCTGATCGGCGGCGACCCGGGCATTGGCAAGTC
GACCATCCTCCTACAGACCCTGTGCAACATCGCCACGCGTCTGCCGGCGCTCTACGTCACCGGCGAAGAGTCGCAGCAGC
AGGTCGCCATGCGCGCGCGTCGCCTGGGCCTGCCGGAAGACAAGCTCAAGGTCATGACCGAGACCTGCATCGAAAGCATC
ATCTCCACGGCTCGCCAGGAGCAGCCGAAGGTGATGGTGATCGACTCGATCCAGACCATCTTCACCGAGCAGCTGCAGTC
CGCCCCCGGCGGCGTCGCCCAGGTGCGCGAGAGCGCGGCGCTGCTGGTGCGCTTCGCCAAACAGAGCGGCACGGCGATCT
TCCTGGTCGGCCACGTCACCAAGGAAGGCGCGCTGGCCGGCCCGCGCGTGCTCGAACACATGGTCGACACCGTGCTGTAT
TTCGAGGGCGAGTCCGACGGCCGCCTGCGCCTGCTGCGCGCGGTGAAGAACCGCTTCGGCGCGGTCAATGAATTGGGCGT
GTTCGCAATGACCGACCGCGGCCTGAAGGAAGTCTCCAACCCTTCGGCGATCTTCCTCACCCGCGCCCAGGAGTCGGTGC
CCGGCAGCGTGGTCATGGCTACCTGGGAGGGCTCGCGGCCGATGCTGGTGGAGGTGCAGGCGCTGGTCGACACCAGCCAC
ATGGCCAACCCGCGCCGCGTGACCCTGGGCCTGGACCAGAACCGCCTGGCCATGCTGCTAGCGGTGCTGCACCGCCACGG
CGGCATCCCGACCTACGACCAGGACGTGTTCCTCAACGTGGTGGGCGGGGTGAAGGTGCTGGAGACGGCCTCCGACCTCG
CGCTGATGGCAGCAGTGATGTCGAGCCTGCGCAACCGTCCACTGGATCACCAGTTGCTGGTGTTCGGCGAGGTCGGCCTG
TCCGGCGAGGTGCGCCCGGTGCCCAGCGGCCAGGAGCGCCTGAAAGAGGCGGCCAAGCATGGCTTCAAGCGCGCCATCGT
GCCGCAAGGCAATGCGCCCAAGGAGGCGCCGGCCGGCCTGCAGGTGATCCCGGTGACGCGCCTGGAGCAGGCGCTGGATG
CGTTGTTCGAGTAG

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(365-431)

AAA domain (AAA_25)

(79-223)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

48.899

99.344

0.486
  radA Streptococcus mitis SK321

45.87

100

0.462
  radA Streptococcus pneumoniae Rx1

45.77

100

0.462
  radA Streptococcus pneumoniae R6

45.77

100

0.462
  radA Streptococcus pneumoniae TIGR4

45.77

100

0.462
  radA Streptococcus pneumoniae D39

45.77

100

0.462
  radA Streptococcus mitis NCTC 12261

45.77

100

0.462

Multiple sequence alignment