Detailed information    

insolico Bioinformatically predicted

Overview

Name   spo0J   Type   Regulator
Locus tag   ACA346_RS10895 Genome accession   NZ_CP166970
Coordinates   2127435..2128193 (+) Length   252 a.a.
NCBI ID   WP_289647064.1    Uniprot ID   -
Organism   Streptococcus parasuis strain NX1     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 2122435..2133193
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACA346_RS10880 (ACA346_10875) - 2124829..2125512 (-) 684 WP_418126881.1 YoaK family protein -
  ACA346_RS10885 (ACA346_10880) rlmH 2125519..2125998 (-) 480 WP_130554909.1 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH -
  ACA346_RS10890 (ACA346_10885) htrA 2126191..2127372 (+) 1182 WP_418126882.1 S1C family serine protease Regulator
  ACA346_RS10895 (ACA346_10890) spo0J 2127435..2128193 (+) 759 WP_289647064.1 ParB/RepB/Spo0J family partition protein Regulator

Sequence

Protein


Download         Length: 252 a.a.        Molecular weight: 28979.47 Da        Isoelectric Point: 9.4558

>NTDB_id=1036461 ACA346_RS10895 WP_289647064.1 2127435..2128193(+) (spo0J) [Streptococcus parasuis strain NX1]
MEELHYLKIKDIQANPYQPRLHFDEEKLLELAQSIKENGVIQPIIVRRSPVIGFELLAGERRLRASQLAGLTEIPAVIKH
LSDDDLLYQAIIENLQRSDLNPIEEAHSYEKLIEKGLTHDEIAQIMGKSRPYITNLLRLLHLSESTRKAVETGKITQGHA
RQLVALSEKQQAEWVQKIQEKDISVRKLETILSSKKKKTIRKSNQFISEEEEKLAKLLGTKVIIQQKKNGSGQLTIHFQN
IEEFERIINSLK

Nucleotide


Download         Length: 759 bp        

>NTDB_id=1036461 ACA346_RS10895 WP_289647064.1 2127435..2128193(+) (spo0J) [Streptococcus parasuis strain NX1]
ATGGAAGAACTACACTATCTCAAAATAAAAGACATTCAGGCCAATCCCTATCAACCAAGATTGCATTTTGATGAAGAAAA
ATTATTGGAATTAGCTCAATCTATCAAAGAAAATGGCGTCATTCAACCTATTATTGTTCGCAGATCACCGGTGATTGGTT
TTGAGTTACTTGCTGGTGAAAGACGATTAAGAGCTAGTCAACTAGCGGGATTAACAGAGATTCCAGCAGTCATCAAGCAT
CTATCTGATGATGATTTACTCTACCAAGCTATCATAGAAAACTTACAACGCTCTGACCTCAATCCTATTGAAGAGGCTCA
TTCCTACGAAAAGTTGATAGAAAAAGGCTTAACACATGATGAGATTGCTCAAATCATGGGAAAATCACGACCATATATCA
CTAATCTTCTTCGTTTACTCCATTTATCCGAATCTACGAGGAAAGCAGTAGAAACAGGAAAAATCACACAAGGGCATGCT
AGACAGCTAGTAGCACTATCAGAGAAACAACAAGCAGAATGGGTTCAAAAAATCCAAGAAAAGGATATCAGCGTACGAAA
GTTAGAAACAATACTATCCTCTAAAAAGAAAAAAACAATTAGAAAATCCAACCAATTTATTTCAGAAGAAGAAGAGAAAT
TAGCAAAACTACTTGGAACCAAAGTAATAATCCAACAAAAGAAAAATGGATCGGGACAACTGACTATTCACTTTCAAAAC
ATCGAAGAATTTGAAAGAATTATCAACAGTCTGAAATAG

Domains

Predicted by InterproScan.

ParB/Sulfiredoxin domain (ParB_N)

(6-94)

HTH domain found in ParB protein (HTH_ParB)

(145-191)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  spo0J Streptococcus mutans UA159

54.724

100

0.552

Multiple sequence alignment