Detailed information    

insolico Bioinformatically predicted

Overview

Name   oppA   Type   Regulator
Locus tag   ACA346_RS08630 Genome accession   NZ_CP166970
Coordinates   1673528..1675321 (-) Length   597 a.a.
NCBI ID   WP_418126720.1    Uniprot ID   -
Organism   Streptococcus parasuis strain NX1     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1668528..1680321
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACA346_RS08610 (ACA346_08610) - 1669431..1670333 (-) 903 WP_418127578.1 ABC transporter permease -
  ACA346_RS08615 (ACA346_08615) opp4B 1670347..1671303 (-) 957 WP_217374205.1 oligopeptide ABC transporter permease -
  ACA346_RS08620 (ACA346_08620) - 1671305..1672246 (-) 942 WP_302480027.1 ATP-binding cassette domain-containing protein -
  ACA346_RS08625 (ACA346_08625) - 1672249..1673268 (-) 1020 WP_217374206.1 ABC transporter ATP-binding protein -
  ACA346_RS08630 (ACA346_08630) oppA 1673528..1675321 (-) 1794 WP_418126720.1 oligopeptide ABC transporter substrate-binding protein Regulator
  ACA346_RS08635 (ACA346_08635) pbp3 1675533..1676774 (+) 1242 WP_418126721.1 D-alanyl-D-alanine carboxypeptidase PBP3 -
  ACA346_RS08640 (ACA346_08640) - 1676883..1677068 (+) 186 WP_418126722.1 hypothetical protein -
  ACA346_RS08645 (ACA346_08645) tnpB 1677049..1677399 (+) 351 WP_014295152.1 IS66 family insertion sequence element accessory protein TnpB -
  ACA346_RS08650 (ACA346_08650) - 1677451..1677657 (+) 207 WP_099390666.1 transposase -
  ACA346_RS08655 (ACA346_08655) - 1677611..1678963 (+) 1353 WP_418126723.1 IS66-like element short variant transposase -

Sequence

Protein


Download         Length: 597 a.a.        Molecular weight: 65641.00 Da        Isoelectric Point: 4.1982

>NTDB_id=1036444 ACA346_RS08630 WP_418126720.1 1673528..1675321(-) (oppA) [Streptococcus parasuis strain NX1]
MKKTTKLFALAGVTLLSASVLAACGSKSSSSSETAELSFPAEVKQDGTAVAESQLKYAWVSASTSSGLLIDELTENTTDS
TFGGMVDISMFGYDGDRKLDDSGLAKAEFDVDGKKITVSLTGKDYKWSDGEPFTIDDYIFTIKAMASKDYTGVRFDDKFL
NIVGMDEFVAGTASDISGLKKVDDYTVELTVKEMSPSMMYAGGDVPAYVQPEHIYKDIPVAEWESSEYSRTAKLVGMGPW
KIKEIVNGESITYVPNEYYFKGTTPKTSSLKIDIVSPDTIVSEMKAGNYDIAQMPADQLDSYKDASNLNLVGSLESSYEY
ISFNLGKYDEASGKNIMDENAKMNDVKLRQAIAYAIDTKTAGEKLYNGLYHPATSLIISFFGDLHDSELEGYSYDPDKAN
ELLDEAGYKDVDGDGIREGKDGKEFKITFAARKRTEANEALVQQYIAWWKEVGLNVDLYTGRTLEINTFYDAVQANDPSI
DMYAGGWSTGYDPNPNGLWGETAPFNMSRFVDEKNTELLDAIGSVASFDEKTNLKNYKAWQEYAFEQAFAIPTFESEAIT
ALNKRVKNFDTNYGSASENGIALENIELTADKGVAAE

Nucleotide


Download         Length: 1794 bp        

>NTDB_id=1036444 ACA346_RS08630 WP_418126720.1 1673528..1675321(-) (oppA) [Streptococcus parasuis strain NX1]
ATGAAAAAGACGACTAAATTATTTGCTCTAGCGGGTGTAACGCTTCTTTCGGCATCTGTACTTGCTGCGTGTGGTTCTAA
ATCTTCTTCTAGCTCTGAGACAGCAGAGTTATCCTTCCCAGCAGAAGTAAAACAAGATGGTACAGCAGTTGCTGAGTCAC
AATTGAAATATGCATGGGTATCAGCATCAACTTCATCAGGTCTGTTAATTGATGAATTAACAGAGAATACGACTGACTCA
ACCTTTGGTGGAATGGTTGATATTTCAATGTTTGGTTACGATGGGGATCGTAAGTTGGATGATTCAGGTCTCGCGAAAGC
GGAGTTTGATGTTGATGGCAAGAAAATCACTGTTAGCTTGACTGGTAAAGACTATAAGTGGTCTGATGGCGAACCATTTA
CAATTGATGACTATATTTTCACAATTAAAGCAATGGCAAGCAAAGATTACACAGGTGTCCGTTTTGATGATAAATTCTTG
AACATTGTGGGTATGGATGAATTTGTTGCTGGCACAGCTTCAGATATCTCAGGTCTTAAAAAAGTTGACGATTATACTGT
AGAATTGACCGTTAAAGAAATGTCACCTTCAATGATGTATGCTGGTGGCGATGTGCCTGCATATGTTCAACCAGAACATA
TCTACAAAGATATTCCGGTTGCAGAATGGGAAAGCAGTGAGTACTCACGTACTGCAAAATTAGTCGGTATGGGTCCATGG
AAAATCAAAGAAATCGTTAATGGTGAGTCTATCACCTACGTTCCTAATGAATACTACTTCAAAGGAACAACTCCTAAAAC
AAGTTCATTGAAGATTGATATTGTATCACCGGATACGATTGTTTCTGAAATGAAAGCTGGTAACTATGATATAGCCCAAA
TGCCAGCAGACCAGTTGGATTCTTACAAGGATGCCTCTAACCTTAACCTTGTTGGATCTCTAGAATCTTCATATGAATAC
ATCTCATTCAACCTTGGTAAATATGATGAAGCATCTGGAAAGAATATCATGGATGAAAATGCTAAGATGAATGACGTGAA
ACTTCGTCAAGCGATTGCGTATGCGATTGATACGAAAACAGCTGGTGAGAAACTCTATAATGGACTTTATCACCCAGCAA
CTTCATTAATCATCTCGTTCTTTGGTGATCTTCATGATTCTGAATTGGAAGGCTACTCATATGATCCAGATAAGGCTAAT
GAGCTATTAGATGAAGCTGGCTATAAAGATGTTGATGGTGATGGTATTCGTGAAGGCAAAGACGGAAAAGAATTTAAAAT
TACATTTGCTGCTCGTAAACGTACTGAGGCGAACGAAGCACTTGTTCAACAATACATTGCTTGGTGGAAAGAAGTTGGTT
TGAATGTTGACTTGTATACTGGTCGAACTTTAGAAATCAACACATTCTATGATGCAGTCCAAGCTAATGATCCGTCTATC
GACATGTATGCTGGTGGATGGTCAACTGGTTACGATCCAAACCCTAATGGACTTTGGGGAGAAACTGCACCATTTAACAT
GTCACGTTTTGTAGATGAAAAGAATACTGAGTTATTGGATGCGATTGGTTCTGTTGCTTCATTTGATGAGAAAACAAACT
TGAAGAACTACAAAGCATGGCAAGAATATGCTTTTGAACAAGCGTTTGCTATTCCAACATTTGAATCAGAAGCAATTACT
GCACTGAATAAGCGCGTTAAAAACTTTGACACTAACTATGGTTCCGCATCAGAAAATGGTATCGCGTTAGAAAACATTGA
ACTCACAGCTGATAAAGGTGTAGCAGCTGAATAA

Domains

Predicted by InterproScan.

Bacterial extracellular solute-binding proteins, family 5 Middle (SBP_bac_5)

(103-500)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  oppA Streptococcus suis isolate S10

86.432

100

0.864

Multiple sequence alignment