Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   ACA346_RS06640 Genome accession   NZ_CP166970
Coordinates   1295933..1297741 (-) Length   602 a.a.
NCBI ID   WP_418126499.1    Uniprot ID   -
Organism   Streptococcus parasuis strain NX1     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 1290933..1302741
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACA346_RS06615 (ACA346_06615) - 1292300..1292788 (-) 489 WP_418126491.1 LURP-one-related/scramblase family protein -
  ACA346_RS06620 (ACA346_06620) prsA 1293056..1294072 (-) 1017 WP_418126493.1 peptidylprolyl isomerase PrsA -
  ACA346_RS06625 (ACA346_06625) - 1294135..1294854 (-) 720 WP_418126495.1 O-methyltransferase -
  ACA346_RS06630 (ACA346_06630) - 1294929..1295477 (-) 549 WP_171988747.1 DUF6630 family protein -
  ACA346_RS06635 (ACA346_06635) - 1295637..1295936 (-) 300 WP_418126497.1 hypothetical protein -
  ACA346_RS06640 (ACA346_06640) pepF 1295933..1297741 (-) 1809 WP_418126499.1 oligoendopeptidase F Regulator
  ACA346_RS06645 (ACA346_06645) coiA 1297814..1298752 (-) 939 WP_418126501.1 competence protein CoiA Machinery gene
  ACA346_RS06650 (ACA346_06650) metG 1298816..1300819 (-) 2004 WP_418126503.1 methionine--tRNA ligase -
  ACA346_RS06655 (ACA346_06655) - 1300985..1301578 (+) 594 WP_274504024.1 DUF1361 domain-containing protein -
  ACA346_RS06660 (ACA346_06660) - 1301850..1302209 (-) 360 WP_418126505.1 hypothetical protein -
  ACA346_RS06665 (ACA346_06665) - 1302236..1302592 (-) 357 WP_418126507.1 hypothetical protein -

Sequence

Protein


Download         Length: 602 a.a.        Molecular weight: 69448.58 Da        Isoelectric Point: 4.4743

>NTDB_id=1036437 ACA346_RS06640 WP_418126499.1 1295933..1297741(-) (pepF) [Streptococcus parasuis strain NX1]
MSKQRHEIEEKYQWDLTTIFPTDEAWEEELASLQAETETAKDFAGHLLDSAKSLLDISETQLGLMRRIEKLYVYASMKND
QDTREGKYQEFQAKAMGLYSAFSQAFAFYEPEFMAITEEQLKAFMDEEPTLVQYSHQFEKLLAAKDHVLSQEIEEVLAAT
SEIFESPAETFSVLDNASILFPEIADEEGHLVPLSHGNYIHFMESKNRDVRQEAYEAMYGTYEQFQHTYAKTLQSNVKVN
NLKARLRKYDSARHASLAANFIPESVYDTLVEAVNKHLPLLHRYINLRKKLLGIDDLKMYDMYTPLSDFSTKISYEDALK
KCQETLEIFGEDYSAIVKEAYENRWIDVHVNEGKRSGAYSGGAYDTNAFMLLNWQDNLDNMYTLIHETGHSLHSMLTRKT
QPYVYGHYSLFLAEIASTTNENLLTEKLLAEVEDDKERFAILNHYLDGFRGTVFRQTQFAEFEQAIYKADQEGQVLTADF
LNELYAQTNEKYYGLSAEENPEIQFEWARIPHFYYNFYVYQYATGFAAASALANKIVNGSPEDKENYLNYLKAGSSDYPL
NVIAKAGVDMTKEDYLNDAFKVFEARLTELEELVEKGVTSLE

Nucleotide


Download         Length: 1809 bp        

>NTDB_id=1036437 ACA346_RS06640 WP_418126499.1 1295933..1297741(-) (pepF) [Streptococcus parasuis strain NX1]
ATGTCTAAACAACGTCATGAAATTGAAGAAAAATACCAGTGGGATTTGACCACTATTTTTCCAACCGATGAAGCTTGGGA
AGAAGAATTAGCTTCATTACAAGCAGAAACTGAAACGGCAAAGGATTTTGCTGGCCACTTGCTTGATTCGGCTAAAAGTC
TCTTAGATATTAGTGAGACACAACTCGGTCTCATGCGTCGCATTGAAAAACTCTATGTCTATGCGTCTATGAAGAACGAT
CAAGATACTCGTGAAGGTAAATACCAGGAATTTCAGGCTAAAGCCATGGGCTTGTATTCGGCCTTTTCACAGGCTTTTGC
CTTCTATGAACCTGAATTTATGGCTATTACTGAGGAACAGTTGAAAGCATTCATGGATGAAGAGCCAACTTTGGTGCAGT
ACAGCCATCAATTTGAAAAACTCTTAGCAGCTAAGGACCATGTTTTGTCACAAGAAATTGAAGAAGTATTGGCTGCTACG
AGTGAGATTTTCGAATCTCCAGCTGAAACTTTCTCTGTTTTGGATAATGCAAGTATCCTATTCCCTGAAATTGCGGATGA
AGAGGGACATTTGGTACCACTTTCTCACGGTAACTACATCCACTTTATGGAGTCTAAAAACCGCGACGTCCGTCAAGAAG
CATATGAGGCTATGTACGGAACCTATGAGCAGTTTCAGCATACCTACGCTAAGACTCTGCAGTCAAACGTTAAGGTCAAT
AACCTGAAAGCACGTTTGCGGAAGTACGACTCAGCCCGTCACGCATCTCTTGCAGCCAATTTTATTCCAGAATCTGTCTA
CGATACGTTAGTTGAGGCAGTCAACAAGCACCTCCCGCTCTTGCACCGTTATATCAATTTGCGAAAGAAACTCTTGGGTA
TTGACGACTTGAAGATGTACGATATGTACACGCCATTATCAGATTTTAGCACCAAGATTTCCTATGAAGATGCACTCAAA
AAATGCCAAGAAACCTTGGAAATCTTCGGTGAGGATTATTCGGCTATTGTAAAAGAAGCCTATGAGAATCGTTGGATTGA
CGTCCATGTCAATGAAGGAAAACGCTCAGGAGCATATTCAGGTGGTGCCTACGACACAAACGCCTTCATGCTTCTCAACT
GGCAAGATAACTTGGATAACATGTACACCCTTATCCATGAAACAGGACATTCTCTTCATTCCATGTTGACTCGCAAGACA
CAACCCTATGTCTATGGGCATTATTCACTTTTCTTAGCTGAAATTGCGTCAACAACCAATGAAAATCTTTTGACAGAAAA
ACTATTGGCAGAAGTAGAAGATGACAAGGAACGCTTTGCTATTCTTAACCATTACCTAGATGGTTTCCGTGGTACAGTCT
TCCGCCAGACACAATTTGCCGAGTTTGAACAAGCTATCTATAAGGCAGACCAAGAAGGTCAAGTCTTGACGGCTGATTTC
CTCAATGAATTATACGCTCAGACTAACGAAAAATACTACGGACTTTCTGCAGAAGAAAACCCAGAAATCCAGTTTGAGTG
GGCTCGCATTCCACACTTCTATTACAATTTCTATGTCTATCAATATGCGACAGGTTTTGCGGCAGCATCAGCTCTCGCAA
ACAAGATTGTCAATGGTAGTCCAGAAGACAAAGAAAACTATCTCAACTACTTGAAGGCTGGTAGCTCAGATTATCCCCTC
AACGTCATTGCAAAAGCTGGTGTAGATATGACCAAGGAAGACTACCTTAACGATGCTTTCAAAGTTTTTGAAGCACGCCT
AACTGAATTGGAAGAGCTTGTTGAAAAAGGGGTTACATCTCTAGAATGA

Domains

Predicted by InterproScan.

Peptidase family M3 (Peptidase_M3)

(202-581)

Oligopeptidase F (Peptidase_M3_N)

(112-181)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

70.234

99.336

0.698

Multiple sequence alignment