Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   ACA346_RS00700 Genome accession   NZ_CP166970
Coordinates   133894..135261 (+) Length   455 a.a.
NCBI ID   WP_130554220.1    Uniprot ID   A0A4Q8L3V7
Organism   Streptococcus parasuis strain NX1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 128894..140261
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACA346_RS00670 (ACA346_00670) - 129450..130244 (-) 795 WP_418126937.1 formate/nitrite transporter family protein -
  ACA346_RS00675 (ACA346_00675) - 130325..131560 (-) 1236 WP_418126938.1 NAD(P)H-dependent oxidoreductase -
  ACA346_RS00680 (ACA346_00680) - 131575..132177 (-) 603 WP_418127492.1 NADPH-dependent FMN reductase -
  ACA346_RS00685 (ACA346_00685) - 132315..132674 (+) 360 WP_130554221.1 YbaN family protein -
  ACA346_RS00690 (ACA346_00690) - 132905..133348 (+) 444 WP_024388517.1 dUTP diphosphatase -
  ACA346_RS00695 (ACA346_00695) - 133424..133887 (+) 464 Protein_115 histidine phosphatase family protein -
  ACA346_RS00700 (ACA346_00700) radA 133894..135261 (+) 1368 WP_130554220.1 DNA repair protein RadA Machinery gene
  ACA346_RS00705 (ACA346_00705) - 135384..135878 (+) 495 WP_418126939.1 beta-class carbonic anhydrase -
  ACA346_RS00710 (ACA346_00710) - 136078..136836 (+) 759 WP_418126940.1 TIGR00266 family protein -
  ACA346_RS00715 (ACA346_00715) - 137007..137453 (+) 447 WP_216806201.1 LytTR family DNA-binding domain-containing protein -
  ACA346_RS00720 (ACA346_00720) - 137458..138132 (+) 675 WP_418126941.1 LiaF transmembrane domain-containing protein -
  ACA346_RS00725 (ACA346_00725) - 138216..138380 (+) 165 WP_242616080.1 hypothetical protein -
  ACA346_RS00730 (ACA346_00730) - 138385..139287 (+) 903 Protein_122 MFS transporter -

Sequence

Protein


Download         Length: 455 a.a.        Molecular weight: 49884.38 Da        Isoelectric Point: 6.1911

>NTDB_id=1036415 ACA346_RS00700 WP_130554220.1 133894..135261(+) (radA) [Streptococcus parasuis strain NX1]
MIIAKKKTTFVCQNCEYHSPKYLGRCPNCGSWSSFVEEVEVAEVKNERVSLTGEKTRPMKLNEVSSIQVARTKTNMEEFN
RVLGGGVVPGSLVLIGGDPGIGKSTLLLQVSTQLSTIGTVLYVSGEESAQQIKLRAERLGDIDSEFYLYAETNMQSIRTE
IEKIKPDFLIIDSIQTIMSPDISSVQGSVSQVREVTNELMQIAKTNNIATFIVGHMTKEGTLAGPRTLEHMVDTVLYFEG
ERQHTFRILRAVKNRFGSTNEIGIFEMQSQGLVEVLNPSEVFLEERLDGATGSAIVVTMEGTRPILAEVQALVTPSMFGN
AKRTTTGLDFNRASLIMAVLEKRAGLLLQNQDAYLKSAGGVKLDEPAIDLAVAVALASSYKDKPTNPQECFIGEIGLTGE
IRRVNRIEQRINEAAKLGFTKVYAPKNSLTGIKVPKEITVIGVTTIGEVLQKVFN

Nucleotide


Download         Length: 1368 bp        

>NTDB_id=1036415 ACA346_RS00700 WP_130554220.1 133894..135261(+) (radA) [Streptococcus parasuis strain NX1]
ATCATCATCGCTAAGAAAAAAACAACCTTTGTCTGCCAAAATTGTGAATACCATTCGCCCAAGTATCTGGGCCGTTGCCC
CAACTGTGGCTCCTGGTCTAGCTTTGTCGAGGAAGTTGAAGTCGCCGAAGTCAAGAACGAGCGGGTTAGCCTGACAGGTG
AGAAGACCCGTCCCATGAAACTCAATGAAGTTTCCTCCATTCAAGTGGCTCGCACTAAGACCAACATGGAGGAGTTCAAC
CGAGTCCTCGGTGGCGGTGTGGTGCCAGGGAGTCTGGTCCTGATCGGAGGCGATCCAGGGATTGGCAAATCCACCCTACT
CTTGCAGGTTTCGACTCAGCTTTCGACCATTGGTACCGTCCTCTATGTGTCCGGGGAAGAGTCTGCCCAGCAGATTAAGT
TGCGGGCGGAACGTTTGGGCGACATCGACAGCGAGTTCTATCTCTATGCGGAGACCAATATGCAGAGCATTCGGACCGAG
ATTGAAAAGATTAAGCCAGATTTCCTGATTATCGACTCTATCCAAACCATTATGAGTCCTGACATTTCTAGCGTACAAGG
TTCTGTCAGTCAGGTCCGTGAAGTGACCAATGAACTCATGCAAATTGCCAAGACCAACAACATCGCAACCTTTATCGTCG
GTCACATGACCAAGGAAGGAACCCTGGCTGGACCTCGGACCTTGGAGCATATGGTAGACACCGTTCTTTATTTTGAAGGC
GAGCGGCAGCATACCTTTCGTATCTTGCGGGCGGTCAAAAACCGCTTTGGCTCTACCAATGAAATCGGCATTTTTGAAAT
GCAGTCACAGGGTTTGGTCGAAGTCCTCAATCCTAGTGAGGTCTTTCTGGAAGAGCGTTTGGACGGGGCGACAGGCTCTG
CTATTGTCGTGACCATGGAGGGCACCCGCCCTATCCTTGCCGAAGTGCAGGCTCTGGTGACCCCGAGCATGTTTGGCAAT
GCCAAGCGGACCACGACAGGCTTGGACTTCAACCGTGCCAGCTTGATTATGGCGGTTTTGGAAAAACGGGCAGGCCTGCT
CCTCCAAAACCAAGATGCCTACCTTAAGTCAGCTGGCGGTGTCAAACTGGATGAGCCAGCTATTGACCTGGCGGTCGCAG
TTGCCCTTGCCTCCAGTTACAAAGATAAGCCAACCAACCCACAAGAGTGCTTTATAGGCGAGATTGGCCTGACAGGTGAA
ATCCGCCGTGTCAATCGGATTGAGCAACGGATTAACGAAGCCGCTAAATTGGGCTTTACCAAGGTCTATGCTCCTAAAAA
TTCCCTGACCGGTATCAAGGTGCCCAAGGAAATCACGGTTATCGGCGTGACAACAATTGGCGAAGTTCTGCAAAAAGTGT
TTAACTAA

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(64-220)

Subunit ChlI of Mg-chelatase (ChlI)

(363-427)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(10-37)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A4Q8L3V7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Streptococcus mitis NCTC 12261

91.372

99.341

0.908
  radA Streptococcus pneumoniae Rx1

91.15

99.341

0.905
  radA Streptococcus pneumoniae D39

91.15

99.341

0.905
  radA Streptococcus pneumoniae R6

91.15

99.341

0.905
  radA Streptococcus pneumoniae TIGR4

91.15

99.341

0.905
  radA Streptococcus mitis SK321

90.929

99.341

0.903
  radA Bacillus subtilis subsp. subtilis str. 168

62.252

99.56

0.62

Multiple sequence alignment