Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   LQ158_RS19790 Genome accession   NZ_OW849377
Coordinates   4116496..4117038 (-) Length   180 a.a.
NCBI ID   WP_015740440.1    Uniprot ID   -
Organism   Escherichia coli isolate 162     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4111496..4122038
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LQ158_RS25415 - 4111952..4112296 (+) 345 Protein_3885 sialate O-acetylesterase -
  LQ158_RS25420 - 4112629..4112718 (-) 90 WP_419144700.1 hypothetical protein -
  LQ158_RS19760 - 4112718..4112822 (-) 105 Protein_3887 HNH endonuclease -
  LQ158_RS19765 (AI2703V1_3794) - 4112922..4113794 (+) 873 WP_000168567.1 phosphorothioated DNA-binding restriction endonuclease -
  LQ158_RS19770 (AI2703V1_3795) - 4113905..4114903 (-) 999 WP_001240355.1 membrane protein -
  LQ158_RS19775 (AI2703V1_3797) - 4115477..4115848 (-) 372 WP_001193488.1 TA system toxin CbtA family protein -
  LQ158_RS19780 (AI2703V1_3798) - 4115887..4116252 (-) 366 WP_001059301.1 type IV toxin-antitoxin system YeeU family antitoxin -
  LQ158_RS19785 (AI2703V1_3799) - 4116278..4116499 (-) 222 WP_000691983.1 DUF987 domain-containing protein -
  LQ158_RS19790 (AI2703V1_3800) radC 4116496..4117038 (-) 543 WP_015740440.1 RadC family protein Machinery gene
  LQ158_RS19795 (AI2703V1_3801) - 4117051..4117494 (-) 444 WP_001096016.1 antirestriction protein -
  LQ158_RS19800 (AI2703V1_3802) - 4117525..4118346 (-) 822 WP_001234409.1 DUF932 domain-containing protein -
  LQ158_RS19805 (AI2703V1_3803) - 4118466..4118939 (-) 474 WP_001298943.1 hypothetical protein -
  LQ158_RS19810 (AI2703V1_3804) - 4119011..4119463 (-) 453 WP_000734321.1 hypothetical protein -
  LQ158_RS19815 (AI2703V1_3805) - 4119499..4120215 (-) 717 WP_000174910.1 helix-turn-helix transcriptional regulator -
  LQ158_RS19820 (AI2703V1_3806) - 4120459..4121334 (-) 876 WP_001039469.1 GTPase family protein -

Sequence

Protein


Download         Length: 180 a.a.        Molecular weight: 20161.13 Da        Isoelectric Point: 7.9875

>NTDB_id=1036401 LQ158_RS19790 WP_015740440.1 4116496..4117038(-) (radC) [Escherichia coli isolate 162]
MNTTISPLLSQPELFPVSVMAQHGCLLPTTSGLTPYAQRTIRRAMNLLDKYLRQPGIAFTSSTAARDWLRLHLARQEREV
FMVLYLDNQHRLLESETLFAGSVNHVQVHSREVVKSALRFNAAAVVLAHNHPSGDPEPSQCDRNITGRLKEALELVDVKT
LDHLVVGRDGIVSFAERGWL

Nucleotide


Download         Length: 543 bp        

>NTDB_id=1036401 LQ158_RS19790 WP_015740440.1 4116496..4117038(-) (radC) [Escherichia coli isolate 162]
ATGAATACCACAATATCCCCACTGTTATCGCAGCCTGAGCTTTTTCCGGTGTCGGTCATGGCTCAGCATGGCTGTTTACT
CCCTACGACTTCCGGACTGACACCCTACGCCCAACGGACCATTCGCCGCGCTATGAACCTGCTGGATAAATATCTGCGTC
AGCCCGGTATAGCCTTTACCTCAAGCACTGCAGCCCGTGACTGGCTCCGGTTACACCTGGCCAGACAGGAGCGGGAGGTG
TTTATGGTGCTCTACCTCGATAATCAGCATCGTTTACTGGAGAGTGAAACGCTGTTCGCCGGTTCGGTAAACCATGTGCA
GGTTCATTCCCGTGAGGTAGTGAAGTCGGCGCTTCGTTTCAATGCCGCAGCTGTCGTGCTGGCGCATAACCATCCCTCCG
GTGATCCGGAGCCCAGCCAATGCGATCGCAACATTACGGGCAGGCTTAAAGAAGCGTTAGAACTGGTTGATGTGAAAACG
CTCGATCATCTTGTTGTCGGTCGGGATGGCATTGTGTCGTTCGCTGAGCGAGGTTGGTTATGA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(60-178)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

42.763

84.444

0.361