Detailed information NTG1036280

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: LQ135_RS10380
• Genome accession: NZ_OW849064
• Coordinates: 2043449..2044441 (-)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli isolate 131
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 2038449..2049441

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
LQ135_RS10360 (AI2721V1_1971)	ygbM	2039087..2039863 (+)	777	WP_001136914.1	HPr family phosphocarrier protein	-
LQ135_RS10365 (AI2721V1_1972)	ygbN	2039952..2041316 (+)	1365	WP_000104433.1	GntP family transporter	-
LQ135_RS10370 (AI2721V1_1973)	-	2041459..2042502 (-)	1044	WP_001161583.1	MBL fold metallo-hydrolase	-
LQ135_RS10375 (AI2721V1_1974)	-	2042727..2043278 (+)	552	WP_001179444.1	flavodoxin family protein	-
LQ135_RS10380 (AI2721V1_1975)	rpoS	2043449..2044441 (-)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
LQ135_RS10385 (AI2721V1_1976)	nlpD	2044504..2045598 (-)	1095	WP_306278776.1	murein hydrolase activator NlpD	-
LQ135_RS10390 (AI2721V1_1977)	pcm	2045783..2046409 (-)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
LQ135_RS10395 (AI2721V1_1978)	surE	2046403..2047164 (-)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
LQ135_RS10400 (AI2721V1_1979)	truD	2047145..2048194 (-)	1050	WP_000568920.1	tRNA pseudouridine(13) synthase TruD	-
LQ135_RS10405 (AI2721V1_1980)	ispF	2048191..2048670 (-)	480	WP_001219237.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
LQ135_RS10410 (AI2721V1_1981)	ispD	2048670..2049380 (-)	711	WP_000246149.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=1036280 LQ135_RS10380 WP_000081550.1 2043449..2044441(-) (rpoS) [Escherichia coli isolate 131]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=1036280 LQ135_RS10380 WP_000081550.1 2043449..2044441(-) (rpoS) [Escherichia coli isolate 131]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGCTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTGATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATCGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCACGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCATTGCTGGACATCCTGGCCGAT
GAAAAAGAGAATGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAATAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715