Detailed information NTG1036244

Bioinformatically predicted

Overview

• Name: cytR
• Type: Regulator
• Locus tag: LQ157_RS22615
• Genome accession: NZ_OW848980
• Coordinates: 4634709..4635734 (+)
• Length: 341 a.a.
• NCBI ID: WP_000644904.1
• Uniprot ID: P0ACN8
• Organism: Escherichia coli isolate 23
• Function: promote competence gene expression (predicted from homology) Competence regulation

Genomic Context

Location: 4629709..4640734

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
LQ157_RS22605 (AI2715V1_4353)	rpmE	4631940..4632152 (-)	213	WP_000710769.1	50S ribosomal protein L31	-
LQ157_RS22610 (AI2715V1_4354)	priA	4632355..4634553 (+)	2199	WP_001324365.1	primosomal protein N'	Machinery gene
LQ157_RS22615 (AI2715V1_4355)	cytR	4634709..4635734 (+)	1026	WP_000644904.1	DNA-binding transcriptional regulator CytR	Regulator
LQ157_RS22620 (AI2715V1_4356)	ftsN	4635826..4636785 (+)	960	WP_000068837.1	cell division protein FtsN	-
LQ157_RS22625 (AI2715V1_4357)	hslV	4636878..4637408 (+)	531	WP_000208242.1	ATP-dependent protease subunit HslV	-
LQ157_RS22630 (AI2715V1_4358)	hslU	4637418..4638749 (+)	1332	WP_001293341.1	HslU--HslV peptidase ATPase subunit	-
LQ157_RS22635 (AI2715V1_4359)	menA	4638816..4639742 (+)	927	WP_000139496.1	1,4-dihydroxy-2-naphthoate polyprenyltransferase	-
LQ157_RS22640 (AI2715V1_4360)	rraA	4639835..4640320 (+)	486	WP_000872908.1	ribonuclease E activity regulator RraA	-
LQ157_RS22645 (AI2715V1_4361)	zapB	4640405..4640650 (-)	246	WP_001296623.1	septal ring assembly protein ZapB	-

Sequence

Protein

• Length: 341 a.a.
• Molecular weight: 37819.78 Da
• Isoelectric Point: 6.3842

>NTDB_id=1036244 LQ157_RS22615 WP_000644904.1 4634709..4635734(+) (cytR) [Escherichia coli isolate 23]
MKAKKQETAATMKDVALKAKVSTATVSRALMNPDKVSQATRNRVEKAAREVGYLPQPMGRNVKRNESRTILVIVPDICDP
FFSEIIRGIEVTAANHGYLVLIGDCAHQNQQEKTFIDLIITKQIDGMLLLGSRLPFDASIEEQRNLPPMVMANEFAPELE
LPTVHIDNLTAAFDAVNYLYEQGHKRIGCIAGPEEMPLCHYRLQGYVQALRRCGIMVDPQYIARGDFTFEAGSKAMQQLL
DLPQPPTAVFCHSDVMALGALSQAKRQGLKVPEDLSIIGFDNIDLTQFCDPPLTTIAQPRYEIGREAMLLLLDQMQGQHV
GSGSRLMDCELIIRGSTRALP

Nucleotide

• Length: 1026 bp

>NTDB_id=1036244 LQ157_RS22615 WP_000644904.1 4634709..4635734(+) (cytR) [Escherichia coli isolate 23]
GTGAAAGCGAAGAAGCAGGAAACTGCCGCGACCATGAAAGACGTTGCCCTCAAGGCAAAAGTCTCTACAGCGACTGTCTC
CCGAGCATTAATGAATCCCGATAAAGTCTCCCAGGCCACCCGTAATCGGGTTGAAAAAGCGGCCCGGGAAGTGGGTTATT
TACCGCAACCTATGGGGCGCAACGTCAAGCGTAATGAATCCCGCACCATTCTGGTGATTGTCCCGGATATCTGCGATCCC
TTCTTTAGCGAAATTATTCGCGGTATCGAAGTTACGGCGGCAAATCACGGATATCTGGTGCTGATTGGCGACTGTGCGCA
TCAAAATCAGCAGGAAAAAACCTTTATCGATTTGATCATCACCAAGCAAATTGATGGCATGTTGCTGCTGGGCTCAAGGC
TGCCGTTTGATGCCAGCATTGAGGAACAGCGTAATCTGCCGCCGATGGTGATGGCGAACGAATTTGCACCGGAACTGGAG
CTGCCTACCGTTCATATCGACAATCTGACCGCCGCATTTGATGCAGTAAATTATTTATATGAGCAAGGGCATAAACGGAT
TGGCTGTATAGCCGGTCCCGAAGAGATGCCACTGTGTCACTACCGCCTGCAAGGCTATGTTCAGGCGCTGCGTCGCTGCG
GCATTATGGTTGATCCGCAATACATCGCCCGTGGCGACTTCACCTTCGAAGCCGGAAGCAAAGCGATGCAGCAGCTGCTT
GATCTTCCACAACCGCCTACTGCTGTCTTCTGCCATAGCGATGTGATGGCGCTCGGCGCACTTTCTCAGGCAAAACGCCA
GGGGCTGAAAGTCCCGGAAGACCTTTCCATAATCGGTTTTGATAACATCGACCTGACGCAATTTTGTGATCCGCCGCTGA
CAACCATCGCGCAGCCGCGTTACGAAATCGGTCGGGAAGCTATGCTGTTATTGCTTGATCAAATGCAGGGGCAACACGTT
GGCAGTGGCTCTCGTTTAATGGACTGCGAACTTATCATCCGGGGATCAACACGCGCGTTACCTTAA

Domains

Predicted by InterProScan.

• Bacterial regulatory proteins, lacI family (LacI) (11-56)

• Periplasmic binding protein-like domain (Peripla_BP_3) (176-337)

3D structure

• AlphaFold DB: P0ACN8

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
cytR	Vibrio parahaemolyticus RIMD 2210633	64.179	98.24	0.63
cytR	Vibrio cholerae C6706	65.443	95.894	0.628