Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   OC536_RS11935 Genome accession   NZ_OW443150
Coordinates   2634841..2635314 (+) Length   157 a.a.
NCBI ID   WP_032477053.1    Uniprot ID   -
Organism   Vibrio cholerae strain CNRVC190247 isolate YE-NCPHL-18035-PI     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2629841..2640314
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OC536_RS11910 (CNRVC190247_02401) - 2630296..2630616 (-) 321 WP_032477057.1 STAS-like domain-containing protein -
  OC536_RS11915 (CNRVC190247_02402) - 2630618..2631637 (-) 1020 WP_032477056.1 hypothetical protein -
  OC536_RS11920 (CNRVC190247_02403) - 2631910..2633067 (-) 1158 WP_050503360.1 beta family protein -
  OC536_RS11925 (CNRVC190247_02404) - 2633080..2634309 (-) 1230 WP_029809306.1 ImmA/IrrE family metallo-endopeptidase -
  OC536_RS11930 (CNRVC190247_02405) - 2634306..2634569 (-) 264 WP_032477054.1 hypothetical protein -
  OC536_RS11935 (CNRVC190247_02406) radC 2634841..2635314 (+) 474 WP_032477053.1 DNA repair protein RadC Machinery gene
  OC536_RS11940 (CNRVC190247_02407) - 2635311..2635748 (+) 438 WP_032477051.1 DUF2787 domain-containing protein -
  OC536_RS11945 (CNRVC190247_02408) - 2635799..2636242 (+) 444 WP_032477050.1 DUF2787 domain-containing protein -
  OC536_RS11950 - 2636246..2636422 (+) 177 WP_032477049.1 hypothetical protein -
  OC536_RS11955 (CNRVC190247_02409) - 2636561..2637295 (+) 735 WP_032477048.1 transcriptional regulator -
  OC536_RS11960 (CNRVC190247_02410) - 2637326..2637694 (+) 369 WP_032477047.1 hypothetical protein -
  OC536_RS11965 (CNRVC190247_02411) - 2637742..2637969 (+) 228 WP_032477046.1 hypothetical protein -
  OC536_RS11970 (CNRVC190247_02412) - 2638144..2639937 (-) 1794 WP_029827291.1 DUF2357 domain-containing protein -

Sequence

Protein


Download         Length: 157 a.a.        Molecular weight: 17777.08 Da        Isoelectric Point: 5.2895

>NTDB_id=1036069 OC536_RS11935 WP_032477053.1 2634841..2635314(+) (radC) [Vibrio cholerae strain CNRVC190247 isolate YE-NCPHL-18035-PI]
MNPKTPDYQKQQRYQENEILEHAAEILATRYVRGDALTNPDATKEYVRCKLGCYEREVFALLLLDNQNRLIEFKELFQGT
VDAASVYPREVVKAVLEVNAAAVIFAHNHPSGDSTPSQADRRITERLKDALALVDVRVLDHIVTGDTCTSFAERGWL

Nucleotide


Download         Length: 474 bp        

>NTDB_id=1036069 OC536_RS11935 WP_032477053.1 2634841..2635314(+) (radC) [Vibrio cholerae strain CNRVC190247 isolate YE-NCPHL-18035-PI]
ATGAATCCCAAAACTCCCGATTACCAAAAGCAGCAACGCTATCAGGAAAATGAAATCCTAGAGCATGCCGCTGAGATACT
GGCAACACGCTACGTGCGTGGTGATGCCCTAACCAATCCTGATGCCACCAAAGAGTATGTGCGCTGCAAGCTAGGCTGCT
ATGAGCGTGAAGTGTTTGCCTTATTGCTGCTGGATAACCAAAACCGTCTGATTGAGTTTAAAGAGCTGTTTCAAGGAACA
GTCGATGCAGCCAGCGTCTACCCGCGAGAAGTGGTGAAAGCGGTGCTGGAAGTCAATGCCGCAGCGGTGATATTTGCGCA
TAACCATCCATCCGGTGACTCAACACCGTCTCAAGCCGATAGACGCATAACCGAAAGACTCAAAGACGCTTTAGCGCTGG
TGGATGTTCGCGTTCTCGACCATATCGTGACAGGCGATACCTGCACCTCGTTTGCAGAAAGGGGGTGGTTATGA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(38-155)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

45.985

87.261

0.401