Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   AB5987_RS02245 Genome accession   NZ_CP166896
Coordinates   444213..446030 (+) Length   605 a.a.
NCBI ID   WP_014568209.1    Uniprot ID   -
Organism   Ligilactobacillus salivarius strain XIF24     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 439213..451030
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB5987_RS02230 - 440656..442302 (+) 1647 WP_014568206.1 phosphoenolpyruvate carboxykinase (ATP) -
  AB5987_RS02235 - 442406..443167 (+) 762 WP_014568207.1 adaptor protein MecA -
  AB5987_RS02240 - 443216..444115 (+) 900 WP_014568208.1 competence protein CoiA -
  AB5987_RS02245 pepF 444213..446030 (+) 1818 WP_014568209.1 oligoendopeptidase F Regulator
  AB5987_RS02250 - 446120..446716 (-) 597 WP_162853479.1 ClpXP adapter SpxH family protein -
  AB5987_RS02255 - 446893..447747 (+) 855 WP_014568210.1 phosphate ABC transporter substrate-binding protein PstS family protein -
  AB5987_RS02260 pstC 447758..448675 (+) 918 WP_003702917.1 phosphate ABC transporter permease subunit PstC -
  AB5987_RS02265 pstA 448675..449565 (+) 891 WP_014568211.1 phosphate ABC transporter permease PstA -
  AB5987_RS02270 pstB 449570..450364 (+) 795 WP_003702915.1 phosphate ABC transporter ATP-binding protein PstB -

Sequence

Protein


Download         Length: 605 a.a.        Molecular weight: 70529.69 Da        Isoelectric Point: 5.5454

>NTDB_id=1036020 AB5987_RS02245 WP_014568209.1 444213..446030(+) (pepF) [Ligilactobacillus salivarius strain XIF24]
MSEKKAKRLLQRNEVPEELTWDLTKVFKSDEEFEKEYQAVKDEVQNFRKLQGTMDQGSQRFLQIIENFLSINRKFEKVYV
YASMKNDQDTTNAKYQGYNEMVDALAAEFSESISWFEPELLELDEDKLKQYFVEKKELKQYEHLIESMLVMRKHTLDKKS
ESLLAGASDIFGTSQNVFGILNNADLKFPIVKDDNGDDIQLSHGVYGKLIESTNRKVRKAAFKGLYSVYDQFKHTMATTL
IGNVKVHNFKARVRNYKDAREAATTSNHIPTEVYDVLLEQVHKNLPLLHRYVKLRKKILGVDELHMYDMYTPLTEDSKLT
YNYIQAQIEAKKALEVLGMDYLTHVSEAFENRWIDVVENKGKRSGAYSSGVYDTPPYILLNWQDNLENLFTLVHEMGHSM
HSYYTSHNQPYQYGDYPIFLAEIASTTNENILTDYLLKNNDEKEILIYILNHYLDGFKGTVYRQTQFAEFEKWIHEQNSK
GVPLTAKSISEYYLELNKKYYGNDVVSDPEIALEWARIPHFYYNFYVYQYATGFAAATTLAENILSGDENKLNKYLTYLK
AGSSKYPLEVMKDAGVDMTDSSYLEKAFKVFEERLNQLETLLSEK

Nucleotide


Download         Length: 1818 bp        

>NTDB_id=1036020 AB5987_RS02245 WP_014568209.1 444213..446030(+) (pepF) [Ligilactobacillus salivarius strain XIF24]
ATGTCTGAAAAGAAAGCAAAAAGATTACTTCAGAGAAATGAAGTTCCAGAAGAATTAACGTGGGATTTAACAAAAGTATT
TAAAAGTGATGAAGAGTTTGAAAAGGAGTACCAAGCTGTAAAAGATGAAGTACAGAACTTCAGAAAATTACAAGGTACAA
TGGATCAAGGTAGTCAAAGATTTTTACAAATCATTGAAAATTTCTTAAGTATTAATAGGAAATTTGAAAAAGTTTATGTA
TATGCAAGTATGAAAAATGATCAAGATACTACAAACGCTAAGTATCAAGGATATAATGAAATGGTTGATGCATTAGCTGC
TGAATTTTCAGAATCTATATCCTGGTTCGAACCTGAGTTACTAGAATTAGATGAAGATAAATTAAAGCAATATTTTGTAG
AAAAAAAAGAATTAAAACAGTATGAACATTTAATTGAGAGTATGTTGGTCATGAGAAAGCATACGCTTGATAAAAAAAGT
GAGTCTTTATTAGCTGGAGCTAGTGATATCTTTGGGACATCGCAAAATGTTTTTGGCATTTTAAACAACGCAGATCTAAA
GTTTCCAATAGTAAAAGATGATAATGGTGATGATATTCAATTATCGCATGGTGTTTATGGAAAATTAATAGAATCTACAA
ATAGGAAAGTTAGAAAAGCTGCATTCAAGGGATTATACAGTGTTTATGACCAATTTAAGCATACAATGGCGACAACATTA
ATTGGAAATGTTAAGGTGCATAACTTTAAAGCAAGAGTTCGTAATTATAAAGATGCTAGAGAAGCTGCCACAACATCTAA
TCATATTCCAACAGAAGTCTATGATGTATTACTGGAACAAGTACACAAAAATCTTCCATTATTACATCGCTATGTAAAGC
TTAGAAAGAAAATATTAGGTGTCGATGAACTCCATATGTATGATATGTATACACCGTTAACTGAAGATAGTAAGCTTACT
TATAATTATATTCAAGCGCAAATTGAAGCAAAAAAGGCACTTGAAGTATTGGGAATGGATTATTTAACGCACGTTAGTGA
AGCATTTGAAAATCGTTGGATAGATGTAGTTGAAAATAAAGGAAAGAGAAGTGGAGCATATTCATCAGGAGTTTATGATA
CTCCGCCATATATCTTATTAAATTGGCAAGATAATTTAGAAAATCTTTTTACCTTGGTACATGAGATGGGACATAGTATG
CATAGTTATTACACTAGTCATAATCAACCCTATCAGTATGGAGATTACCCAATATTTTTGGCAGAAATAGCTTCAACTAC
TAATGAAAATATTTTGACGGATTATCTATTAAAGAATAACGATGAAAAAGAGATATTAATCTATATTTTAAATCATTATT
TAGATGGATTTAAAGGTACGGTATATCGTCAAACACAATTTGCAGAATTTGAAAAATGGATTCATGAACAGAATTCAAAA
GGAGTACCACTAACTGCTAAATCAATTTCTGAATATTACTTAGAATTAAATAAGAAATATTATGGCAATGATGTAGTAAG
CGATCCTGAGATAGCTTTAGAGTGGGCTAGAATTCCGCATTTTTATTATAATTTCTATGTTTATCAATATGCGACAGGAT
TTGCAGCAGCAACTACTTTAGCTGAAAATATTTTATCTGGCGATGAAAATAAATTAAACAAATATTTAACTTACTTAAAA
GCTGGTAGTAGTAAATATCCATTGGAAGTCATGAAAGATGCAGGTGTGGATATGACAGATTCTTCATATTTGGAGAAAGC
ATTTAAAGTTTTTGAAGAAAGATTAAATCAATTAGAGACATTATTGTCAGAAAAATAA

Domains

Predicted by InterproScan.

Peptidase family M3 (Peptidase_M3)

(209-589)

Oligopeptidase F (Peptidase_M3_N)

(119-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

53.378

97.851

0.522

Multiple sequence alignment