Detailed information
Bioinformatically predicted
Overview
| Name | pilP | Type | Machinery gene |
| Locus tag | OC536_RS01500 | Genome accession | NZ_OW443150 |
| Coordinates | 326785..327303 (+) | Length | 172 a.a. |
| NCBI ID | WP_172779491.1 | Uniprot ID | - |
| Organism | Vibrio cholerae strain CNRVC190247 isolate YE-NCPHL-18035-PI | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 321785..332303
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| OC536_RS01480 (CNRVC190247_00300) | - | 322002..324479 (-) | 2478 | WP_032477106.1 | penicillin-binding protein 1A | - |
| OC536_RS01485 (CNRVC190247_00301) | pilM | 324622..325638 (+) | 1017 | WP_000520444.1 | type IV pilus assembly protein PilM | Machinery gene |
| OC536_RS01490 (CNRVC190247_00302) | pilN | 325628..326212 (+) | 585 | WP_000902746.1 | PilN domain-containing protein | Machinery gene |
| OC536_RS01495 (CNRVC190247_00303) | pilO | 326205..326795 (+) | 591 | WP_000157690.1 | type 4a pilus biogenesis protein PilO | Machinery gene |
| OC536_RS01500 (CNRVC190247_00304) | pilP | 326785..327303 (+) | 519 | WP_172779491.1 | pilus assembly protein PilP | Machinery gene |
| OC536_RS01505 (CNRVC190247_00305) | pilQ | 327329..329044 (+) | 1716 | WP_000788426.1 | type IV pilus secretin PilQ | Machinery gene |
| OC536_RS01510 (CNRVC190247_00306) | aroK | 329231..329755 (+) | 525 | WP_000818616.1 | shikimate kinase AroK | - |
| OC536_RS01515 (CNRVC190247_00307) | aroB | 329783..330868 (+) | 1086 | WP_000439805.1 | 3-dehydroquinate synthase | - |
Sequence
Protein
Download Length: 172 a.a. Molecular weight: 19122.30 Da Isoelectric Point: 10.1427
>NTDB_id=1036014 OC536_RS01500 WP_172779491.1 326785..327303(+) (pilP) [Vibrio cholerae strain CNRVC190247 isolate YE-NCPHL-18035-PI]
MKNKPLGLWLMSLLVLVGCKANQDDLTSYVAQVEREARKEVTKLKPILEFEATSYQQHKGREPFVLPKEALVQNQPLAKA
YCWQPVPRAKNGPLERYPLHQLRLKGVMSSGGSISALVQTPAGSVVKVKAGQYVGINNGKVTRVDDNYLLINETLPDGLG
CWNQRNVKLALK
MKNKPLGLWLMSLLVLVGCKANQDDLTSYVAQVEREARKEVTKLKPILEFEATSYQQHKGREPFVLPKEALVQNQPLAKA
YCWQPVPRAKNGPLERYPLHQLRLKGVMSSGGSISALVQTPAGSVVKVKAGQYVGINNGKVTRVDDNYLLINETLPDGLG
CWNQRNVKLALK
Nucleotide
Download Length: 519 bp
>NTDB_id=1036014 OC536_RS01500 WP_172779491.1 326785..327303(+) (pilP) [Vibrio cholerae strain CNRVC190247 isolate YE-NCPHL-18035-PI]
ATGAAAAATAAACCGCTTGGATTATGGCTGATGAGTTTATTGGTGTTGGTCGGGTGTAAGGCGAACCAAGATGATTTGAC
CTCATACGTCGCGCAAGTTGAGCGTGAAGCGCGCAAAGAAGTGACTAAGCTCAAGCCCATTTTAGAGTTTGAAGCCACGT
CCTATCAGCAGCACAAGGGGCGTGAGCCGTTTGTCTTACCGAAAGAAGCGTTAGTGCAAAACCAACCGCTAGCCAAAGCC
TACTGTTGGCAACCCGTGCCACGTGCGAAAAATGGGCCGTTGGAGCGTTATCCATTGCACCAATTGCGCTTAAAAGGGGT
GATGAGCAGCGGGGGCAGTATCTCTGCCTTAGTGCAAACGCCGGCAGGGAGTGTGGTCAAGGTTAAGGCGGGTCAGTATG
TCGGAATCAATAATGGCAAAGTCACCCGAGTCGATGACAACTATTTGTTAATTAATGAAACTTTGCCTGATGGCTTAGGG
TGTTGGAATCAGCGTAACGTCAAGCTGGCTTTAAAATAA
ATGAAAAATAAACCGCTTGGATTATGGCTGATGAGTTTATTGGTGTTGGTCGGGTGTAAGGCGAACCAAGATGATTTGAC
CTCATACGTCGCGCAAGTTGAGCGTGAAGCGCGCAAAGAAGTGACTAAGCTCAAGCCCATTTTAGAGTTTGAAGCCACGT
CCTATCAGCAGCACAAGGGGCGTGAGCCGTTTGTCTTACCGAAAGAAGCGTTAGTGCAAAACCAACCGCTAGCCAAAGCC
TACTGTTGGCAACCCGTGCCACGTGCGAAAAATGGGCCGTTGGAGCGTTATCCATTGCACCAATTGCGCTTAAAAGGGGT
GATGAGCAGCGGGGGCAGTATCTCTGCCTTAGTGCAAACGCCGGCAGGGAGTGTGGTCAAGGTTAAGGCGGGTCAGTATG
TCGGAATCAATAATGGCAAAGTCACCCGAGTCGATGACAACTATTTGTTAATTAATGAAACTTTGCCTGATGGCTTAGGG
TGTTGGAATCAGCGTAACGTCAAGCTGGCTTTAAAATAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilP | Vibrio cholerae strain A1552 |
98.837 |
100 |
0.988 |
| pilP | Vibrio campbellii strain DS40M4 |
56.395 |
100 |
0.564 |