Detailed information NTG1036010

Bioinformatically predicted

Overview

• Name: cytR
• Type: Regulator
• Locus tag: OC536_RS01275
• Genome accession: NZ_OW443150
• Coordinates: 279062..280069 (+)
• Length: 335 a.a.
• NCBI ID: WP_000224452.1
• Uniprot ID: Q9KNQ4
• Organism: Vibrio cholerae strain CNRVC190247 isolate YE-NCPHL-18035-PI
• Function: promote competence gene expression (predicted from homology) Competence regulation

Genomic Context

Location: 274062..285069

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
OC536_RS01255 (CNRVC190247_00254)	metJ	274067..274384 (+)	318	WP_000796267.1	met regulon transcriptional regulator MetJ	-
OC536_RS01260 (CNRVC190247_00255)	-	274494..275771 (-)	1278	WP_032477253.1	malic enzyme-like NAD(P)-binding protein	-
OC536_RS01265 (CNRVC190247_00256)	rpmE	276079..276297 (-)	219	WP_000643446.1	50S ribosomal protein L31	-
OC536_RS01270 (CNRVC190247_00257)	priA	276552..278756 (+)	2205	WP_001247903.1	primosomal protein N'	Machinery gene
OC536_RS01275 (CNRVC190247_00258)	cytR	279062..280069 (+)	1008	WP_000224452.1	DNA-binding transcriptional regulator CytR	Regulator
OC536_RS01280 (CNRVC190247_00259)	-	280241..280792 (+)	552	WP_001891621.1	SPOR domain-containing protein	-
OC536_RS01285 (CNRVC190247_00260)	hslV	280929..281486 (+)	558	WP_000208249.1	ATP-dependent protease subunit HslV	-
OC536_RS01290 (CNRVC190247_00261)	hslU	281552..282883 (+)	1332	WP_001293366.1	HslU--HslV peptidase ATPase subunit	-
OC536_RS01295 (CNRVC190247_00262)	-	282987..283904 (+)	918	WP_001066162.1	1,4-dihydroxy-2-naphthoate polyprenyltransferase	-
OC536_RS01300 (CNRVC190247_00263)	rraA	283979..284494 (+)	516	WP_000456242.1	ribonuclease E activity regulator RraA	-

Sequence

Protein

• Length: 335 a.a.
• Molecular weight: 37018.59 Da
• Isoelectric Point: 7.0759

>NTDB_id=1036010 OC536_RS01275 WP_000224452.1 279062..280069(+) (cytR) [Vibrio cholerae strain CNRVC190247 isolate YE-NCPHL-18035-PI]
MATMKDVAQLAGVSTATVSRALMNPEKVSSSTRKRVEEAVLEAGYSPNSLARNLRRNESKTIVAIVPDICDPYFSEIIRG
IEDAAMEHGYLVLLGDSGQQKRRENSFVNLVFTKQADGMLLLGTDLPFDVSKPEQKNLPPMVMACEFAPELELPTVHIDN
LTSAFEAVNYLTQLGHKRIAQISGPQHAALCQFRHQGYQQALRRAGITMNPTYCTFGDFTFEAGAKAVRQLLALPEQPTA
IFCHNDTMAIGAIQEAKRLGLRVPQDLSVVGFDDIQFAQYCDPPLTTISQPRYEIGRQAMLMMLELLRGHDVRAGSRLLE
TKLVVRESAAPPSKK

Nucleotide

• Length: 1008 bp

>NTDB_id=1036010 OC536_RS01275 WP_000224452.1 279062..280069(+) (cytR) [Vibrio cholerae strain CNRVC190247 isolate YE-NCPHL-18035-PI]
ATGGCGACAATGAAGGATGTTGCCCAGCTTGCTGGAGTTTCAACCGCGACCGTGTCTCGTGCGTTGATGAATCCAGAGAA
AGTCTCGTCGTCCACTCGCAAACGAGTGGAAGAGGCCGTGCTGGAAGCGGGTTACTCACCCAATTCTTTGGCGCGCAATT
TGCGCCGTAATGAATCGAAAACCATCGTTGCTATCGTGCCAGATATCTGTGATCCCTACTTTTCTGAGATCATTCGCGGT
ATTGAAGATGCCGCGATGGAGCACGGTTATCTGGTGCTGTTGGGGGATAGTGGTCAACAGAAGCGTCGGGAGAACTCGTT
CGTTAATCTGGTGTTTACCAAACAGGCAGACGGTATGTTGCTGCTGGGGACAGATTTGCCGTTTGATGTGAGTAAACCTG
AGCAGAAAAACCTACCGCCTATGGTGATGGCGTGTGAATTTGCGCCAGAGCTGGAATTGCCAACGGTACACATTGATAAC
CTGACCTCGGCATTTGAGGCGGTAAACTATCTCACTCAGCTTGGGCACAAACGGATTGCGCAGATCTCTGGTCCACAACA
TGCTGCGCTGTGCCAATTCCGTCATCAAGGCTATCAACAGGCGCTGCGTCGTGCTGGCATCACCATGAACCCGACTTACT
GCACTTTTGGCGATTTCACTTTTGAAGCCGGGGCAAAAGCGGTGCGTCAGCTGTTGGCATTGCCTGAGCAGCCGACCGCG
ATTTTCTGTCATAACGATACGATGGCGATTGGCGCAATTCAGGAAGCGAAGCGACTTGGCTTGCGCGTACCGCAAGATCT
CTCTGTGGTCGGTTTTGACGATATTCAGTTTGCCCAGTACTGCGATCCCCCATTAACCACCATTTCGCAGCCGCGTTATG
AGATTGGCCGTCAAGCCATGCTGATGATGCTCGAATTATTGCGCGGACACGATGTGCGTGCTGGATCGCGTCTTTTGGAG
ACCAAGCTGGTCGTGCGTGAGAGTGCTGCGCCGCCAAGCAAGAAGTAA

Domains

Predicted by InterProScan.

• Bacterial regulatory proteins, lacI family (LacI) (3-48)

• Periplasmic binding protein-like domain (Peripla_BP_3) (168-328)

3D structure

• AlphaFold DB: Q9KNQ4

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
cytR	Vibrio cholerae C6706	100	100	1
cytR	Vibrio parahaemolyticus RIMD 2210633	90.719	99.701	0.904