Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   ACA341_RS16475 Genome accession   NZ_CP166880
Coordinates   3380001..3380624 (-) Length   207 a.a.
NCBI ID   WP_045375660.1    Uniprot ID   -
Organism   Klebsiella aerogenes strain YS-AT1     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Genomic island 3363860..3381583 3380001..3380624 within 0


Gene organization within MGE regions


Location: 3363860..3381583
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACA341_RS16430 (ACA341_16430) - 3363860..3364879 (+) 1020 WP_371197325.1 hypothetical protein -
  ACA341_RS16435 (ACA341_16435) - 3365339..3372685 (+) 7347 WP_371197327.1 hypothetical protein -
  ACA341_RS16440 (ACA341_16440) - 3372973..3373110 (-) 138 Protein_3228 BapA prefix-like domain-containing protein -
  ACA341_RS16445 (ACA341_16445) - 3373737..3374129 (+) 393 Protein_3229 IS4/IS5 family transposase -
  ACA341_RS16450 (ACA341_16450) - 3374176..3374589 (-) 414 WP_032714178.1 CoA-binding protein -
  ACA341_RS16455 (ACA341_16455) mgsA 3374747..3375205 (+) 459 WP_015367424.1 methylglyoxal synthase -
  ACA341_RS16460 (ACA341_16460) helD 3375236..3377290 (-) 2055 WP_108419290.1 DNA helicase IV -
  ACA341_RS16465 (ACA341_16465) - 3377414..3377860 (+) 447 WP_045375580.1 YccF domain-containing protein -
  ACA341_RS16470 (ACA341_16470) yccS 3377878..3380013 (+) 2136 WP_045375582.1 YccS family putative transporter -
  ACA341_RS16475 (ACA341_16475) sxy/tfoX 3380001..3380624 (-) 624 WP_045375660.1 TfoX/Sxy family DNA transformation protein Regulator
  ACA341_RS16480 (ACA341_16480) sulA 3381074..3381583 (+) 510 WP_045375584.1 SOS-induced cell division inhibitor SulA -

Sequence

Protein


Download         Length: 207 a.a.        Molecular weight: 23614.36 Da        Isoelectric Point: 9.8892

>NTDB_id=1035906 ACA341_RS16475 WP_045375660.1 3380001..3380624(-) (sxy/tfoX) [Klebsiella aerogenes strain YS-AT1]
MKKISKLRFLQFQECLSPLGKICSRPLFGGYSLAIENTVFAMVAEGEIYLRVCEQSASYRVEHHSPMLMMRKNGRPVALK
YYRIDEALWQDSKMLFHLSQLSLHSARSDKQHQRDSGRLKNLPNISFHMELMLIHAGITDVKMLRTLGAEKSWLKLREHN
KGISINVLESLAGAIAGIHSAALPAQRRQELREWANTQGYSVEDYSG

Nucleotide


Download         Length: 624 bp        

>NTDB_id=1035906 ACA341_RS16475 WP_045375660.1 3380001..3380624(-) (sxy/tfoX) [Klebsiella aerogenes strain YS-AT1]
ATGAAGAAAATTTCTAAATTACGGTTCCTCCAGTTTCAGGAGTGTCTTTCCCCATTAGGCAAAATCTGTAGTCGGCCATT
ATTCGGTGGTTATAGTCTGGCGATTGAAAATACCGTATTCGCCATGGTGGCTGAAGGCGAAATCTATCTTAGGGTTTGCG
AACAAAGTGCCTCTTATCGGGTTGAACATCACAGCCCGATGCTAATGATGCGCAAGAATGGCCGACCGGTGGCCTTAAAG
TATTACCGGATAGATGAAGCACTTTGGCAGGACAGTAAAATGCTGTTTCATCTGTCGCAGCTGTCATTGCATTCGGCGCG
AAGCGATAAGCAGCATCAGCGTGATTCCGGCAGGCTAAAGAATTTGCCTAATATCAGCTTCCATATGGAGTTGATGTTGA
TCCATGCCGGAATAACCGATGTGAAAATGCTGCGTACACTCGGGGCGGAAAAGAGCTGGTTAAAATTGAGAGAGCATAAT
AAAGGAATATCAATCAATGTCCTTGAGTCCCTGGCGGGCGCGATTGCCGGCATTCATTCCGCCGCGCTCCCGGCGCAGCG
GCGCCAGGAGCTACGGGAGTGGGCTAATACGCAAGGATACAGCGTGGAGGATTATTCCGGTTGA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-105)

TfoX C-terminal domain (TfoX_C)

(117-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

51.269

95.169

0.488

Multiple sequence alignment