Detailed information    

insolico Bioinformatically predicted

Overview

Name   comC   Type   Machinery gene
Locus tag   ABKQ09_RS13720 Genome accession   NZ_CP166870
Coordinates   2737528..2738274 (-) Length   248 a.a.
NCBI ID   WP_106033359.1    Uniprot ID   -
Organism   Bacillus atrophaeus strain F4     
Function   processing and translocation of ComGC; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2732528..2743274
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABKQ09_RS13695 (ABKQ09_13690) mreC 2732924..2733796 (-) 873 WP_003325240.1 rod shape-determining protein MreC -
  ABKQ09_RS13700 (ABKQ09_13695) mreB 2733827..2734840 (-) 1014 WP_003325239.1 cell shape-determining protein MreB -
  ABKQ09_RS13705 (ABKQ09_13700) radC 2734932..2735627 (-) 696 WP_219946424.1 DNA repair protein RadC -
  ABKQ09_RS13710 (ABKQ09_13705) - 2735662..2736231 (-) 570 WP_061669850.1 nucleoside triphosphate pyrophosphatase -
  ABKQ09_RS13715 (ABKQ09_13710) - 2736378..2737394 (-) 1017 WP_003325236.1 SPOR domain-containing protein -
  ABKQ09_RS13720 (ABKQ09_13715) comC 2737528..2738274 (-) 747 WP_106033359.1 A24 family peptidase Machinery gene
  ABKQ09_RS13725 (ABKQ09_13720) - 2738428..2739723 (-) 1296 WP_010789380.1 folylpolyglutamate synthase/dihydrofolate synthase family protein -
  ABKQ09_RS13730 (ABKQ09_13725) valS 2739781..2742423 (-) 2643 WP_371176023.1 valine--tRNA ligase -
  ABKQ09_RS13735 (ABKQ09_13730) - 2742870..2743061 (+) 192 WP_003325232.1 hypothetical protein -

Sequence

Protein


Download         Length: 248 a.a.        Molecular weight: 26738.44 Da        Isoelectric Point: 9.1068

>NTDB_id=1035773 ABKQ09_RS13720 WP_106033359.1 2737528..2738274(-) (comC) [Bacillus atrophaeus strain F4]
MVLVMFILGLIFGSFFYAAGCRIPLQISIIKPRSSCSFCRNPLSYAELIPVFSFFLQKGRCKSCSQKLSLMYPAAELWTA
GLFTAAYLRFGLSGELFVALLLISLLSIIVASDIHYMLIPDSVLMFFLPFLIAGRMIAPLPAWYDSLSGAAAGFFMLVLI
AVLSKGGIGGGDIKLFAVLGIALGVKMLIAAFVLAVFIGMLYGACGTLSGKLDRKQPIPFAPAIAAGSLVSYLYGEEILA
LYVKMAMY

Nucleotide


Download         Length: 747 bp        

>NTDB_id=1035773 ABKQ09_RS13720 WP_106033359.1 2737528..2738274(-) (comC) [Bacillus atrophaeus strain F4]
ATGGTTTTAGTCATGTTTATCCTCGGTCTCATCTTCGGGTCCTTTTTCTATGCGGCAGGCTGCCGTATCCCCTTACAAAT
CTCCATTATAAAACCGCGCTCATCCTGTTCATTCTGCCGCAATCCGTTGTCTTATGCTGAATTAATCCCGGTTTTCTCTT
TCTTTCTGCAAAAAGGCCGATGTAAAAGTTGTTCACAAAAACTGTCGCTGATGTATCCGGCCGCAGAGCTTTGGACAGCG
GGTTTGTTTACGGCAGCTTATCTGCGTTTCGGTTTATCCGGGGAACTTTTTGTCGCGCTGCTGCTCATTTCCTTGCTGAG
CATTATCGTGGCATCAGATATTCACTATATGCTGATCCCTGACAGTGTGCTGATGTTTTTTCTCCCTTTTTTGATAGCAG
GAAGAATGATTGCACCGCTTCCTGCTTGGTATGATAGTTTATCAGGAGCCGCAGCCGGTTTTTTCATGCTGGTCTTGATT
GCCGTACTCAGTAAAGGAGGAATCGGGGGCGGCGATATTAAGCTATTTGCCGTTTTGGGTATCGCGCTTGGTGTTAAAAT
GCTGATCGCAGCCTTTGTCCTTGCTGTCTTTATAGGTATGCTGTACGGCGCATGCGGCACGTTGTCAGGAAAGCTCGATC
GAAAACAGCCGATCCCCTTCGCTCCTGCGATAGCTGCCGGAAGCTTGGTAAGTTATCTGTACGGTGAAGAAATATTAGCA
CTCTATGTCAAAATGGCCATGTACTGA

Domains

Predicted by InterproScan.

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(7-90)

Type IV leader peptidase family (Peptidase_A24)

(101-203)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comC Bacillus subtilis subsp. subtilis str. 168

62.348

99.597

0.621

Multiple sequence alignment