Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   ABKQ09_RS11210 Genome accession   NZ_CP166870
Coordinates   2289779..2290387 (+) Length   202 a.a.
NCBI ID   WP_061670112.1    Uniprot ID   -
Organism   Bacillus atrophaeus strain F4     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2284779..2295387
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABKQ09_RS11170 (ABKQ09_11165) - 2285888..2286394 (-) 507 WP_003325657.1 PTS glucose transporter subunit IIA -
  ABKQ09_RS11175 (ABKQ09_11170) - 2286544..2286963 (+) 420 WP_061670115.1 Hsp20/alpha crystallin family protein -
  ABKQ09_RS11180 (ABKQ09_11175) - 2286983..2287372 (-) 390 WP_003325655.1 YppG family protein -
  ABKQ09_RS11185 (ABKQ09_11180) - 2287562..2287750 (+) 189 WP_003325653.1 YppF family protein -
  ABKQ09_RS11190 (ABKQ09_11185) - 2287781..2288155 (-) 375 WP_003325652.1 YppE family protein -
  ABKQ09_RS11195 (ABKQ09_11190) - 2288197..2288442 (-) 246 WP_061670114.1 DUF5446 family protein -
  ABKQ09_RS11200 (ABKQ09_11195) sspM 2288643..2288747 (+) 105 WP_003325650.1 acid-soluble spore protein SspM -
  ABKQ09_RS11205 (ABKQ09_11200) - 2288774..2289736 (-) 963 WP_141292141.1 DUF2515 domain-containing protein -
  ABKQ09_RS11210 (ABKQ09_11205) recU 2289779..2290387 (+) 609 WP_061670112.1 Holliday junction resolvase RecU Machinery gene
  ABKQ09_RS11215 (ABKQ09_11210) - 2290425..2293178 (+) 2754 WP_061670111.1 PBP1A family penicillin-binding protein -
  ABKQ09_RS11220 (ABKQ09_11215) - 2293270..2293761 (-) 492 WP_061670110.1 YpoC family protein -
  ABKQ09_RS11225 (ABKQ09_11220) nth 2293758..2294417 (-) 660 WP_061670109.1 endonuclease III -
  ABKQ09_RS11230 (ABKQ09_11225) dnaD 2294436..2295134 (-) 699 WP_003325644.1 DNA replication protein DnaD -

Sequence

Protein


Download         Length: 202 a.a.        Molecular weight: 23639.94 Da        Isoelectric Point: 9.8392

>NTDB_id=1035754 ABKQ09_RS11210 WP_061670112.1 2289779..2290387(+) (recU) [Bacillus atrophaeus strain F4]
MIRYPNGKTFQPKKTVSSQNRQKKPLTYSNRGMTLEDDLNETNKYYLAKQIAVIHKKPTPVQIVNVHYPKRSAAVIKEAY
FKQSSTTDYNGLYKGRYIDFEAKETKNTTSFPLQNFHDHQIEHMKQVTAQDGICFVIISAFGQVYFLEAEKLFYFWERKE
KNGRKSIRKDELNEAAFPISLGYSPRIDYISIIEQLYFSPNP

Nucleotide


Download         Length: 609 bp        

>NTDB_id=1035754 ABKQ09_RS11210 WP_061670112.1 2289779..2290387(+) (recU) [Bacillus atrophaeus strain F4]
GTGATTCGGTATCCCAACGGAAAAACGTTTCAGCCGAAAAAAACGGTTTCATCCCAAAATAGGCAAAAAAAGCCGCTAAC
ATACAGTAATCGCGGCATGACCCTCGAAGATGACTTAAATGAAACGAATAAGTATTATCTAGCAAAGCAAATTGCTGTGA
TTCACAAAAAACCGACGCCCGTGCAAATTGTAAATGTCCATTATCCAAAAAGAAGCGCAGCTGTCATCAAAGAAGCCTAT
TTTAAGCAGTCATCAACAACTGACTATAATGGACTTTACAAAGGCCGGTATATTGATTTTGAAGCAAAGGAAACGAAAAA
TACAACCTCCTTCCCTTTGCAAAACTTTCATGATCACCAAATTGAGCATATGAAGCAGGTAACGGCTCAAGACGGAATTT
GTTTTGTTATTATATCCGCTTTCGGCCAAGTTTATTTTTTAGAGGCTGAAAAGCTGTTTTACTTCTGGGAAAGAAAAGAA
AAGAACGGCAGAAAGTCGATTCGGAAAGACGAATTAAATGAAGCCGCTTTTCCAATTTCACTTGGATACTCGCCAAGAAT
TGATTATATTAGTATTATTGAACAGCTTTATTTTTCGCCAAACCCATAA

Domains

Predicted by InterproScan.

Recombination protein U (RecU)

(31-193)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

90.05

99.505

0.896

Multiple sequence alignment