Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   ABKQ09_RS07780 Genome accession   NZ_CP166870
Coordinates   1526836..1527114 (+) Length   92 a.a.
NCBI ID   WP_003329146.1    Uniprot ID   -
Organism   Bacillus atrophaeus strain F4     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 1521836..1532114
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABKQ09_RS07760 (ABKQ09_07755) - 1523031..1523945 (+) 915 WP_371176506.1 ketopantoate reductase family protein -
  ABKQ09_RS07765 (ABKQ09_07760) - 1523976..1525208 (-) 1233 WP_268375020.1 aminopeptidase -
  ABKQ09_RS07770 (ABKQ09_07765) - 1525310..1525444 (-) 135 WP_010788482.1 protein YkpC -
  ABKQ09_RS07775 (ABKQ09_07770) mreBH 1525546..1526553 (-) 1008 WP_061670906.1 cell shape-determining protein MreBH -
  ABKQ09_RS07780 (ABKQ09_07775) abrB 1526836..1527114 (+) 279 WP_003329146.1 transcriptional regulator AbhA Regulator
  ABKQ09_RS07785 (ABKQ09_07780) - 1527326..1528612 (+) 1287 WP_371176507.1 ATP-binding protein -
  ABKQ09_RS07790 (ABKQ09_07785) - 1528625..1529464 (+) 840 WP_106034163.1 gamma-glutamylcyclotransferase -
  ABKQ09_RS07795 (ABKQ09_07790) ktrC 1529514..1530179 (+) 666 WP_010788485.1 Ktr system potassium transporter KtrC -
  ABKQ09_RS07800 (ABKQ09_07795) ade 1530348..1532075 (+) 1728 WP_268369979.1 adenine deaminase -

Sequence

Protein


Download         Length: 92 a.a.        Molecular weight: 10211.03 Da        Isoelectric Point: 6.9804

>NTDB_id=1035749 ABKQ09_RS07780 WP_003329146.1 1526836..1527114(+) (abrB) [Bacillus atrophaeus strain F4]
MKSIGVVRKVDELGRIVMPIELRRALDIAIKDSIEFFVDGDKIVLKKYKPHGVCLMTGEITTENKEYGNGKIILSPEGAQ
QLLDEIQAALKA

Nucleotide


Download         Length: 279 bp        

>NTDB_id=1035749 ABKQ09_RS07780 WP_003329146.1 1526836..1527114(+) (abrB) [Bacillus atrophaeus strain F4]
ATGAAATCAATTGGTGTTGTAAGAAAAGTAGATGAACTTGGCCGTATTGTTATGCCGATAGAATTAAGAAGAGCGTTAGA
TATTGCGATTAAAGACAGTATTGAGTTCTTTGTAGACGGAGATAAAATCGTCTTGAAAAAATATAAGCCGCACGGCGTGT
GTTTAATGACAGGGGAAATTACGACAGAAAATAAAGAATACGGCAATGGAAAAATCATTTTAAGTCCAGAAGGCGCACAG
CAGCTGCTTGACGAAATTCAAGCTGCTTTAAAAGCATAA

Domains

Predicted by InterproScan.

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(8-51)

AbrB C-terminal domain (AbrB_C)

(53-88)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

58.242

98.913

0.576

Multiple sequence alignment