Detailed information    

insolico Bioinformatically predicted

Overview

Name   rok   Type   Regulator
Locus tag   ABKQ09_RS07660 Genome accession   NZ_CP166870
Coordinates   1502464..1503039 (+) Length   191 a.a.
NCBI ID   WP_003327252.1    Uniprot ID   -
Organism   Bacillus atrophaeus strain F4     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 1497464..1508039
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABKQ09_RS07630 (ABKQ09_07625) dapD 1497584..1498294 (+) 711 WP_003327258.1 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase -
  ABKQ09_RS07635 (ABKQ09_07630) - 1498367..1499491 (+) 1125 WP_061670698.1 N-acetyldiaminopimelate deacetylase -
  ABKQ09_RS07640 (ABKQ09_07635) - 1499552..1499797 (+) 246 WP_003327256.1 YkuS family protein -
  ABKQ09_RS07645 (ABKQ09_07640) - 1499836..1500639 (-) 804 WP_371176502.1 mechanosensitive ion channel family protein -
  ABKQ09_RS07650 (ABKQ09_07645) ahpA 1500889..1501431 (+) 543 WP_003327254.1 biofilm-specific peroxidase AhpA -
  ABKQ09_RS07655 (ABKQ09_07650) - 1501516..1501974 (+) 459 WP_003327253.1 TlpA disulfide reductase family protein -
  ABKQ09_RS07660 (ABKQ09_07655) rok 1502464..1503039 (+) 576 WP_003327252.1 transcriptional regulator Rok Regulator
  ABKQ09_RS07665 (ABKQ09_07660) - 1503085..1504044 (-) 960 WP_003327251.1 hypothetical protein -
  ABKQ09_RS07670 (ABKQ09_07665) - 1504188..1504772 (+) 585 WP_061670699.1 molybdenum cofactor guanylyltransferase -
  ABKQ09_RS07675 (ABKQ09_07670) - 1504844..1505863 (+) 1020 WP_371176503.1 MoeB/ThiF family adenylyltransferase -
  ABKQ09_RS07680 (ABKQ09_07675) glp 1505883..1507175 (+) 1293 WP_371176504.1 gephyrin-like molybdotransferase Glp -
  ABKQ09_RS07685 (ABKQ09_07680) mobB 1507136..1507660 (+) 525 WP_010788470.1 molybdopterin-guanine dinucleotide biosynthesis protein B -

Sequence

Protein


Download         Length: 191 a.a.        Molecular weight: 21713.65 Da        Isoelectric Point: 9.8783

>NTDB_id=1035748 ABKQ09_RS07660 WP_003327252.1 1502464..1503039(+) (rok) [Bacillus atrophaeus strain F4]
MFNEREALRLRLEQLNEAEVKVIREYQIERDKIYAKLRELDRNGSSAAETKKDFRPERKSESLPVLAELAAQEIRSYQPQ
QASQPQPQSISSIPAGIPDGTTRRRRGTARPGSKAAKLREAAIKTLKRHNAAIKSSELQKEIEKESGLEIPNMTTFMQSL
IKMYPEVKKPYRGQYILEGEIASDSAENVTE

Nucleotide


Download         Length: 576 bp        

>NTDB_id=1035748 ABKQ09_RS07660 WP_003327252.1 1502464..1503039(+) (rok) [Bacillus atrophaeus strain F4]
ATGTTTAATGAGAGGGAAGCTTTACGCTTGCGTTTGGAACAGTTAAATGAGGCTGAGGTTAAAGTCATCCGTGAATATCA
AATAGAGCGTGACAAAATATATGCAAAACTAAGAGAGCTTGACCGCAATGGAAGCTCAGCAGCGGAAACAAAAAAAGATT
TTCGCCCTGAAAGAAAAAGTGAGTCTCTTCCTGTGCTAGCCGAGCTTGCAGCACAAGAGATCAGAAGCTATCAGCCGCAG
CAGGCATCACAGCCGCAGCCGCAATCCATCTCTTCTATTCCGGCGGGTATTCCGGACGGAACGACAAGAAGAAGAAGAGG
AACGGCAAGACCGGGTTCAAAGGCAGCAAAGCTTCGTGAAGCGGCAATCAAAACATTAAAACGCCATAACGCAGCGATCA
AAAGCTCCGAACTTCAAAAGGAAATTGAGAAGGAAAGCGGGCTTGAAATCCCTAATATGACAACGTTTATGCAAAGTTTA
ATTAAAATGTATCCGGAAGTGAAAAAGCCATATCGCGGCCAGTACATTTTAGAAGGCGAAATCGCTTCAGACTCTGCTGA
AAATGTGACTGAATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rok Bacillus subtilis subsp. subtilis str. 168

86.598

100

0.88

Multiple sequence alignment