Detailed information    

insolico Bioinformatically predicted

Overview

Name   kre   Type   Regulator
Locus tag   ABKQ09_RS07550 Genome accession   NZ_CP166870
Coordinates   1485183..1485647 (-) Length   154 a.a.
NCBI ID   WP_003327274.1    Uniprot ID   -
Organism   Bacillus atrophaeus strain F4     
Function   regulation of regulators (predicted from homology)   
Competence regulation

Genomic Context

Location: 1480183..1490647
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABKQ09_RS07530 (ABKQ09_07525) - 1480630..1482450 (+) 1821 WP_003327278.1 PAS domain-containing protein -
  ABKQ09_RS07535 (ABKQ09_07530) - 1482473..1483642 (-) 1170 WP_371176499.1 aminotransferase A -
  ABKQ09_RS07540 (ABKQ09_07535) - 1483848..1484009 (-) 162 WP_371176500.1 hypothetical protein -
  ABKQ09_RS07545 (ABKQ09_07540) cheV 1484218..1485129 (+) 912 WP_003327275.1 chemotaxis protein CheV -
  ABKQ09_RS07550 (ABKQ09_07545) kre 1485183..1485647 (-) 465 WP_003327274.1 YkyB family protein Regulator
  ABKQ09_RS07555 (ABKQ09_07550) - 1485770..1487065 (-) 1296 WP_003327273.1 MFS transporter -
  ABKQ09_RS07560 (ABKQ09_07555) - 1487141..1487638 (-) 498 WP_087941879.1 L,D-transpeptidase family protein -
  ABKQ09_RS07565 (ABKQ09_07560) - 1487774..1488634 (-) 861 WP_106034176.1 metallophosphoesterase -
  ABKQ09_RS07570 (ABKQ09_07565) fadH 1488780..1489544 (+) 765 WP_003327269.1 2,4-dienoyl-CoA reductase -
  ABKQ09_RS07575 (ABKQ09_07570) - 1489620..1489754 (+) 135 Protein_1440 hypothetical protein -

Sequence

Protein


Download         Length: 154 a.a.        Molecular weight: 17942.68 Da        Isoelectric Point: 10.4207

>NTDB_id=1035747 ABKQ09_RS07550 WP_003327274.1 1485183..1485647(-) (kre) [Bacillus atrophaeus strain F4]
MDDHAYTKDLRPTIENLSKAVYTVNRHAKTAPNPKYLYTLKKRALQKLVKEGKGKKVGLHFSKNPRFSQQQSDVLISIGD
YYFHMPPTKEDFEHLPHLGTLNQSYRNPKAQMSLTKAKNLLQDYVGMKEKPFVTNRQQPTYHKPVFKKLGESYF

Nucleotide


Download         Length: 465 bp        

>NTDB_id=1035747 ABKQ09_RS07550 WP_003327274.1 1485183..1485647(-) (kre) [Bacillus atrophaeus strain F4]
ATGGACGACCATGCATATACGAAAGATCTGCGGCCAACCATCGAAAATCTTTCAAAAGCTGTCTACACTGTGAACCGCCA
TGCAAAAACCGCCCCCAACCCTAAATACCTTTATACTTTGAAAAAACGGGCTTTACAAAAGCTAGTGAAAGAAGGTAAAG
GAAAGAAAGTAGGGCTTCATTTTTCAAAAAATCCAAGGTTTAGCCAACAGCAATCGGACGTGCTCATCTCAATCGGAGAC
TACTATTTTCACATGCCTCCAACAAAAGAAGACTTCGAACACCTTCCGCATTTAGGTACGCTAAATCAATCGTACCGGAA
TCCTAAAGCTCAAATGTCTTTAACAAAAGCGAAAAACCTTTTGCAAGATTATGTCGGCATGAAAGAAAAACCGTTTGTCA
CAAATCGGCAGCAGCCAACTTACCATAAACCTGTTTTCAAAAAGCTTGGAGAAAGTTACTTTTAA

Domains

Predicted by InterproScan.

YkyB-like protein (YkyB)

(13-128)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  kre Bacillus subtilis subsp. subtilis str. 168

94.156

100

0.942

Multiple sequence alignment