Detailed information    

insolico Bioinformatically predicted

Overview

Name   nucA/comI   Type   Machinery gene
Locus tag   ABKQ09_RS06480 Genome accession   NZ_CP166870
Coordinates   1291641..1292066 (+) Length   141 a.a.
NCBI ID   WP_219947784.1    Uniprot ID   -
Organism   Bacillus atrophaeus strain F4     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1286641..1297066
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABKQ09_RS06440 (ABKQ09_06435) - 1287055..1287351 (+) 297 WP_371176462.1 peptidoglycan-binding protein -
  ABKQ09_RS06445 (ABKQ09_06440) - 1288039..1288377 (-) 339 WP_268365808.1 contact-dependent growth inhibition system immunity protein -
  ABKQ09_RS06450 (ABKQ09_06445) - 1288366..1288686 (+) 321 WP_268365807.1 putative quinol monooxygenase -
  ABKQ09_RS06455 (ABKQ09_06450) - 1288810..1288935 (+) 126 WP_262982303.1 hypothetical protein -
  ABKQ09_RS06460 (ABKQ09_06455) - 1289830..1290111 (-) 282 WP_061571258.1 hypothetical protein -
  ABKQ09_RS06465 (ABKQ09_06460) - 1290506..1290661 (+) 156 Protein_1218 hypothetical protein -
  ABKQ09_RS06470 (ABKQ09_06465) - 1290783..1291112 (-) 330 WP_268365805.1 hypothetical protein -
  ABKQ09_RS06475 (ABKQ09_06470) - 1291172..1291450 (-) 279 WP_003327515.1 hypothetical protein -
  ABKQ09_RS06480 (ABKQ09_06475) nucA/comI 1291641..1292066 (+) 426 WP_219947784.1 NucA/NucB deoxyribonuclease domain-containing protein Machinery gene
  ABKQ09_RS06485 (ABKQ09_06480) - 1292215..1292877 (+) 663 WP_010788290.1 MgtC/SapB family protein -
  ABKQ09_RS06490 (ABKQ09_06485) - 1292936..1293175 (-) 240 WP_003327512.1 hypothetical protein -
  ABKQ09_RS06495 (ABKQ09_06490) - 1293388..1293600 (-) 213 WP_003327511.1 aspartyl-phosphate phosphatase Spo0E family protein -
  ABKQ09_RS06500 (ABKQ09_06495) - 1293660..1293875 (-) 216 WP_072053284.1 spore coat protein -
  ABKQ09_RS06505 (ABKQ09_06500) - 1294189..1295589 (+) 1401 WP_371176463.1 polysaccharide deacetylase family protein -
  ABKQ09_RS06510 (ABKQ09_06505) - 1295642..1296115 (-) 474 WP_199680591.1 YjfA family protein -
  ABKQ09_RS06515 (ABKQ09_06510) - 1296251..1296661 (-) 411 WP_371176464.1 DUF2809 domain-containing protein -

Sequence

Protein


Download         Length: 141 a.a.        Molecular weight: 15533.39 Da        Isoelectric Point: 4.9399

>NTDB_id=1035743 ABKQ09_RS06480 WP_219947784.1 1291641..1292066(+) (nucA/comI) [Bacillus atrophaeus strain F4]
MKKWITSLFLTAAILFGLMGAEVYAPQDVKGASRYDQVLYFPFSRYPETGDHIKDAIAAGHSDVCTIDRAGADERREESL
KGVPTKRGYDRDEWPMAVCEEGGTGADIRYVTPSDNRGAGSWVGNQMSGYSDGTRVLFIVQ

Nucleotide


Download         Length: 426 bp        

>NTDB_id=1035743 ABKQ09_RS06480 WP_219947784.1 1291641..1292066(+) (nucA/comI) [Bacillus atrophaeus strain F4]
ATGAAAAAATGGATCACGAGCTTATTTCTGACCGCAGCGATATTGTTTGGATTGATGGGTGCGGAAGTGTATGCTCCGCA
GGATGTCAAAGGCGCATCACGGTATGATCAGGTTCTTTACTTCCCATTTTCACGTTATCCTGAAACCGGCGATCACATTA
AAGATGCGATAGCGGCCGGGCATTCAGATGTATGTACGATTGACAGGGCCGGGGCGGATGAGCGCAGGGAGGAGTCTTTA
AAGGGGGTTCCTACGAAACGGGGGTATGACCGGGATGAGTGGCCGATGGCTGTATGTGAAGAAGGCGGGACCGGGGCGGA
TATCCGGTATGTCACCCCATCTGATAATCGAGGCGCCGGTTCATGGGTCGGGAATCAAATGAGCGGTTATTCTGATGGTA
CGAGAGTATTATTTATCGTACAGTAG

Domains

Predicted by InterproScan.

Deoxyribonuclease NucA/NucB (DNase_NucA_NucB)

(45-135)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nucA/comI Bacillus subtilis subsp. subtilis str. 168

60.317

89.362

0.539

Multiple sequence alignment