Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   KHU1_RS01845 Genome accession   NZ_CP007242
Coordinates   375069..375704 (+) Length   211 a.a.
NCBI ID   WP_042634889.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens KHG19     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 370069..380704
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KHU1_RS01810 (KHU1_0346) - 371126..371425 (-) 300 WP_032866803.1 spore coat protein -
  KHU1_RS01815 (KHU1_0347) - 371441..371638 (-) 198 WP_007409327.1 hypothetical protein -
  KHU1_RS01820 (KHU1_0348) - 371657..372793 (-) 1137 WP_042634887.1 zinc-dependent alcohol dehydrogenase -
  KHU1_RS01825 (KHU1_0349) - 372812..373180 (-) 369 WP_003156070.1 spore coat protein -
  KHU1_RS01830 (KHU1_0350) - 373198..373443 (-) 246 WP_007409324.1 hypothetical protein -
  KHU1_RS01840 (KHU1_0352) - 373916..375076 (+) 1161 WP_042635694.1 sensor histidine kinase -
  KHU1_RS01845 (KHU1_0353) vraR 375069..375704 (+) 636 WP_042634889.1 response regulator transcription factor Regulator
  KHU1_RS01850 (KHU1_0354) - 375803..377956 (+) 2154 WP_042634890.1 MMPL family transporter -
  KHU1_RS01855 (KHU1_0355) - 377990..378712 (-) 723 WP_042634892.1 gamma-glutamyl-gamma-aminobutyrate hydrolase family protein -
  KHU1_RS01860 (KHU1_0356) abc-f 378838..380469 (-) 1632 WP_042634893.1 ribosomal protection-like ABC-F family protein -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 23603.26 Da        Isoelectric Point: 5.1671

>NTDB_id=103574 KHU1_RS01845 WP_042634889.1 375069..375704(+) (vraR) [Bacillus amyloliquefaciens KHG19]
MYKVLIADDHLVVREGLKLLIETNDHYTITGEAENGKTAVRLAEELKPDVILMDLYMPEMSGLEAIKQIKEHSDVPIIIL
TTYNEDHLMIEGIESGANGYLLKDTSSETLFHTMDAAVRGEVLLQPDILRRFRELKMERANANETQLTDKEIIVLQAVAQ
GHKSKAIAFDLGISERTVKARLTSIYNKLGADSRTEAVTIAMQKGILKLNI

Nucleotide


Download         Length: 636 bp        

>NTDB_id=103574 KHU1_RS01845 WP_042634889.1 375069..375704(+) (vraR) [Bacillus amyloliquefaciens KHG19]
ATGTATAAAGTGTTAATAGCAGATGACCATCTTGTCGTCAGAGAAGGTCTGAAGCTTTTGATAGAAACAAATGACCATTA
CACCATAACGGGAGAGGCGGAAAACGGGAAAACCGCCGTCCGCCTCGCAGAGGAACTAAAGCCCGATGTCATTCTCATGG
ATCTGTACATGCCGGAAATGAGCGGGCTGGAAGCCATTAAACAGATAAAAGAGCATTCTGATGTGCCGATCATTATTTTG
ACGACCTATAATGAAGATCATCTGATGATAGAAGGCATTGAATCAGGCGCGAACGGTTATCTGCTGAAAGACACAAGCTC
AGAAACCTTATTTCATACGATGGATGCGGCGGTCAGGGGAGAAGTGCTTCTGCAGCCGGACATCTTGCGGCGTTTCCGGG
AACTGAAAATGGAACGGGCAAATGCCAATGAAACACAGCTGACGGACAAGGAAATCATAGTTCTGCAAGCCGTTGCGCAA
GGACATAAAAGCAAAGCGATCGCCTTCGATTTAGGAATCTCAGAGCGGACGGTAAAAGCGAGATTAACATCGATTTATAA
CAAATTAGGCGCTGATTCGCGGACGGAAGCCGTCACCATTGCCATGCAAAAAGGCATTCTGAAACTGAATATATAA

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, luxR family (GerE)

(146-201)

Response regulator receiver domain (Response_reg)

(4-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

36.364

99.052

0.36

Multiple sequence alignment