Detailed information    

insolico Bioinformatically predicted

Overview

Name   comK   Type   Regulator
Locus tag   ABKQ09_RS05620 Genome accession   NZ_CP166870
Coordinates   1139419..1139994 (+) Length   191 a.a.
NCBI ID   WP_010788160.1    Uniprot ID   -
Organism   Bacillus atrophaeus strain F4     
Function   activate transcription of late competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1134419..1144994
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABKQ09_RS05595 (ABKQ09_05595) - 1134848..1135363 (-) 516 WP_371176577.1 methyl-accepting chemotaxis protein -
  ABKQ09_RS05600 (ABKQ09_05600) - 1135652..1136029 (-) 378 Protein_1046 protoglobin domain-containing protein -
  ABKQ09_RS05605 (ABKQ09_05605) - 1136305..1137897 (-) 1593 WP_206699531.1 FAD-dependent oxidoreductase -
  ABKQ09_RS05610 (ABKQ09_05610) - 1137971..1138828 (+) 858 WP_003327697.1 SDR family oxidoreductase -
  ABKQ09_RS05615 (ABKQ09_05615) - 1138859..1139092 (-) 234 WP_003327696.1 IDEAL domain-containing protein -
  ABKQ09_RS05620 (ABKQ09_05620) comK 1139419..1139994 (+) 576 WP_010788160.1 competence protein ComK Regulator
  ABKQ09_RS05625 (ABKQ09_05625) - 1140212..1140484 (+) 273 WP_003327694.1 excalibur calcium-binding domain-containing protein -
  ABKQ09_RS05630 (ABKQ09_05630) - 1140512..1141999 (-) 1488 WP_003327693.1 sodium:solute symporter -
  ABKQ09_RS05635 (ABKQ09_05635) - 1141996..1142196 (-) 201 WP_003327692.1 DUF3311 domain-containing protein -
  ABKQ09_RS05640 (ABKQ09_05640) - 1142324..1142689 (-) 366 WP_003327690.1 hypothetical protein -
  ABKQ09_RS05645 (ABKQ09_05645) - 1142844..1143467 (+) 624 WP_268371763.1 TVP38/TMEM64 family protein -
  ABKQ09_RS05650 (ABKQ09_05650) lepB 1143470..1143970 (+) 501 WP_003327688.1 signal peptidase I -

Sequence

Protein


Download         Length: 191 a.a.        Molecular weight: 22264.48 Da        Isoelectric Point: 8.1215

>NTDB_id=1035734 ABKQ09_RS05620 WP_010788160.1 1139419..1139994(+) (comK) [Bacillus atrophaeus strain F4]
MSQKTDAPLDTYEVNSSTIAVLPEPMNGKMYSKIIEKDCTFYVSMKPLQIVDRSCRYFGSSYAGRKAGTYEVINISHKPP
IMVDLSNHIFLFPTLSSTRPQCGWISHVHVKEFKATEFDDTAVTFSNGKTMELPVSCNSFENQVYRTAWLRTKFQDRVEH
APKRQEFMLYPKEERTRMIYDFILRELGERY

Nucleotide


Download         Length: 576 bp        

>NTDB_id=1035734 ABKQ09_RS05620 WP_010788160.1 1139419..1139994(+) (comK) [Bacillus atrophaeus strain F4]
ATGAGTCAGAAAACTGACGCACCCCTAGACACCTACGAAGTAAACAGCTCAACAATCGCCGTATTGCCCGAACCGATGAA
CGGGAAAATGTACTCAAAGATCATTGAAAAGGACTGCACGTTTTATGTCAGCATGAAGCCGCTGCAAATTGTCGACCGAA
GCTGCCGTTACTTTGGCTCAAGTTATGCGGGAAGAAAAGCGGGAACCTATGAAGTGATTAACATTTCTCACAAGCCGCCG
ATCATGGTGGACCTTTCCAACCATATCTTTTTATTCCCTACACTTTCTTCAACAAGACCCCAATGCGGCTGGATATCACA
CGTGCATGTAAAAGAATTTAAAGCCACGGAATTCGACGATACAGCTGTGACCTTTTCCAATGGAAAAACAATGGAGCTCC
CGGTCTCCTGCAATTCGTTCGAAAACCAGGTCTACCGCACGGCGTGGCTCAGAACAAAATTCCAAGACCGGGTCGAACAC
GCGCCAAAACGGCAGGAATTCATGCTGTACCCGAAGGAAGAACGCACGCGGATGATTTATGATTTTATTTTGCGCGAGTT
GGGCGAGCGGTACTGA

Domains

Predicted by InterproScan.

ComK protein (ComK)

(10-158)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comK Bacillus subtilis subsp. subtilis str. 168

87.5

100

0.88

Multiple sequence alignment