Detailed information    

insolico Bioinformatically predicted

Overview

Name   recX   Type   Regulator
Locus tag   ABKQ09_RS04495 Genome accession   NZ_CP166870
Coordinates   925406..926197 (+) Length   263 a.a.
NCBI ID   WP_004430590.1    Uniprot ID   -
Organism   Bacillus atrophaeus strain F4     
Function   inhibit excessive RecA-mediated recombination (predicted from homology)   
Competence regulation

Genomic Context

Location: 920406..931197
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABKQ09_RS04465 (ABKQ09_04465) - 921251..922264 (+) 1014 WP_087941833.1 iron ABC transporter permease -
  ABKQ09_RS04470 (ABKQ09_04470) - 922381..923262 (+) 882 WP_061669831.1 PhzF family phenazine biosynthesis isomerase -
  ABKQ09_RS04475 (ABKQ09_04475) - 923343..923927 (+) 585 WP_061573406.1 nitroreductase -
  ABKQ09_RS04480 (ABKQ09_04480) - 923966..924157 (-) 192 WP_004430587.1 YfhD family protein -
  ABKQ09_RS04485 (ABKQ09_04485) - 924235..924345 (-) 111 WP_003223230.1 YfhE family protein -
  ABKQ09_RS04490 (ABKQ09_04490) - 924404..925315 (-) 912 WP_004430588.1 TIGR01777 family oxidoreductase -
  ABKQ09_RS04495 (ABKQ09_04495) recX 925406..926197 (+) 792 WP_004430590.1 recombination regulator RecX Regulator
  ABKQ09_RS04500 (ABKQ09_04500) - 926205..926531 (+) 327 WP_061669832.1 YfhH family protein -
  ABKQ09_RS04505 (ABKQ09_04505) - 926666..927865 (+) 1200 WP_268371818.1 MFS transporter -
  ABKQ09_RS04510 (ABKQ09_04510) - 927906..928058 (-) 153 WP_004430596.1 small, acid-soluble spore protein K -
  ABKQ09_RS04515 (ABKQ09_04515) - 928175..928444 (+) 270 WP_004430597.1 YfhJ family protein -
  ABKQ09_RS04520 (ABKQ09_04520) - 928572..929108 (+) 537 WP_061669834.1 SH3 domain-containing protein -
  ABKQ09_RS04525 (ABKQ09_04525) - 929249..929596 (+) 348 WP_061669835.1 SdpI family protein -
  ABKQ09_RS04530 (ABKQ09_04530) - 929583..930449 (+) 867 WP_004430601.1 alpha/beta fold hydrolase -

Sequence

Protein


Download         Length: 263 a.a.        Molecular weight: 30952.20 Da        Isoelectric Point: 7.4549

>NTDB_id=1035729 ABKQ09_RS04495 WP_004430590.1 925406..926197(+) (recX) [Bacillus atrophaeus strain F4]
MPFITKITTQKKTTERFNIFLDNKYAFSVDADVLVKFDLKKGKELDDLDIVEIQYGDEVKKGFNRALEFLSYRMRSTKEV
TDHLKKKEISDPAITEIIHKLNDYRYLNDKEFAEAYASTHKKTNGKGPDVLYKELRSKGIDDDTIKETLSTFSFEEQTEE
ALKHIGKILKKEKKLSTKEIKQRAQMLLQRKGFSFDVITAALEQTEYANDEDTEREALRQHAEKALRKYRYDGSYESKMK
VKQYLFRKGFSLDMIDQFLQEEE

Nucleotide


Download         Length: 792 bp        

>NTDB_id=1035729 ABKQ09_RS04495 WP_004430590.1 925406..926197(+) (recX) [Bacillus atrophaeus strain F4]
ATGCCGTTTATCACGAAAATCACAACGCAGAAAAAAACGACCGAGCGCTTTAACATTTTTCTCGATAATAAATATGCTTT
CAGTGTGGATGCGGACGTACTCGTCAAATTCGACCTGAAAAAAGGAAAAGAACTCGACGACCTTGATATCGTTGAGATTC
AATACGGGGATGAAGTAAAGAAAGGCTTTAACCGTGCGCTTGAATTTTTATCATACCGGATGCGCTCAACAAAAGAGGTA
ACGGACCATTTAAAGAAGAAAGAAATATCAGATCCGGCCATTACAGAAATCATCCATAAGCTGAATGATTATCGCTATCT
GAATGATAAAGAGTTCGCAGAAGCTTATGCGAGCACACATAAGAAAACAAATGGAAAGGGACCGGACGTTCTTTATAAAG
AGTTAAGGTCAAAGGGGATCGACGATGACACGATCAAAGAGACACTGAGCACATTTTCTTTTGAGGAACAGACAGAAGAG
GCGCTGAAGCATATCGGAAAAATCCTGAAAAAAGAAAAAAAGCTCTCTACAAAAGAAATCAAGCAGCGAGCGCAAATGCT
TTTGCAGCGAAAGGGCTTCTCCTTCGACGTCATCACAGCGGCGCTTGAGCAGACCGAGTATGCAAACGATGAAGATACAG
AAAGGGAAGCGTTACGGCAGCACGCTGAAAAGGCGCTAAGAAAATACCGATATGACGGCTCCTACGAGAGCAAGATGAAG
GTAAAACAATATTTATTCAGAAAAGGATTCTCACTGGATATGATAGACCAATTTCTGCAGGAAGAGGAGTAA

Domains

Predicted by InterproScan.

RecX family (RecX_HTH2)

(84-206)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recX Bacillus subtilis subsp. subtilis str. 168

82.89

100

0.829

Multiple sequence alignment