Detailed information    

insolico Bioinformatically predicted

Overview

Name   comS   Type   Regulator
Locus tag   ABKQ09_RS02025 Genome accession   NZ_CP166870
Coordinates   408702..408842 (+) Length   46 a.a.
NCBI ID   WP_223254972.1    Uniprot ID   -
Organism   Bacillus atrophaeus strain F4     
Function   preventing the degradation of ComK (predicted from homology)   
Competence regulation

Genomic Context

Location: 403702..413842
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABKQ09_RS02020 (ABKQ09_02020) - 405569..408661 (+) 3093 Protein_364 amino acid adenylation domain-containing protein -
  ABKQ09_RS02025 (ABKQ09_02025) comS 408702..408842 (+) 141 WP_223254972.1 competence protein ComS Regulator

Sequence

Protein


Download         Length: 46 a.a.        Molecular weight: 5352.32 Da        Isoelectric Point: 10.1700

>NTDB_id=1035724 ABKQ09_RS02025 WP_223254972.1 408702..408842(+) (comS) [Bacillus atrophaeus strain F4]
MNRFSKRLIKSIILYPRPSEGCISSISLDKQAQATTSLLYFCWKEK

Nucleotide


Download         Length: 141 bp        

>NTDB_id=1035724 ABKQ09_RS02025 WP_223254972.1 408702..408842(+) (comS) [Bacillus atrophaeus strain F4]
TTGAACCGATTCAGCAAGCGCCTTATCAAGAGCATTATCCTGTATCCTCGGCCCAGCGAAGGATGTATATCCTCAATCAG
CTTGGACAAACAAGCACAAGCTACAACGTCCCTGCTGTACTTCTGCTGGAAGGAGAAGTAG

Domains

Predicted by InterproScan.

Bacillus competence protein S (ComS)

(1-44)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comS Bacillus subtilis subsp. subtilis str. 168

80.435

100

0.804

Multiple sequence alignment