Detailed information    

insolico Bioinformatically predicted

Overview

Name   nin/comJ   Type   Regulator
Locus tag   ABKQ09_RS01980 Genome accession   NZ_CP166870
Coordinates   389406..389804 (-) Length   132 a.a.
NCBI ID   WP_003328075.1    Uniprot ID   -
Organism   Bacillus atrophaeus strain F4     
Function   represses the expression of nucA (predicted from homology)   
Competence regulation

Genomic Context

Location: 384406..394804
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABKQ09_RS01950 (ABKQ09_01950) - 385397..385852 (+) 456 WP_268386820.1 RDD family protein -
  ABKQ09_RS01955 (ABKQ09_01955) - 385937..386266 (+) 330 WP_010787600.1 YckD family protein -
  ABKQ09_RS01960 (ABKQ09_01960) - 386370..386795 (+) 426 WP_010787601.1 MarR family winged helix-turn-helix transcriptional regulator -
  ABKQ09_RS01965 (ABKQ09_01965) - 386783..387124 (+) 342 WP_371176303.1 DUF3147 family protein -
  ABKQ09_RS01970 (ABKQ09_01970) - 387144..387863 (+) 720 WP_150224380.1 AAA family ATPase -
  ABKQ09_RS01975 (ABKQ09_01975) - 387933..389369 (+) 1437 WP_088116477.1 glycoside hydrolase family 1 protein -
  ABKQ09_RS01980 (ABKQ09_01980) nin/comJ 389406..389804 (-) 399 WP_003328075.1 competence protein ComJ Regulator
  ABKQ09_RS01985 (ABKQ09_01985) nucA/comI 389823..390260 (-) 438 WP_088116478.1 NucA/NucB deoxyribonuclease domain-containing protein Machinery gene
  ABKQ09_RS01990 (ABKQ09_01990) - 390482..391432 (-) 951 WP_371176569.1 methyl-accepting chemotaxis protein -
  ABKQ09_RS01995 (ABKQ09_01995) - 391643..392185 (-) 543 Protein_359 cache domain-containing protein -
  ABKQ09_RS02000 (ABKQ09_02000) hxlB 392314..392871 (-) 558 WP_268374817.1 6-phospho-3-hexuloisomerase -
  ABKQ09_RS02005 (ABKQ09_02005) hxlA 392878..393510 (-) 633 WP_003328079.1 3-hexulose-6-phosphate synthase -
  ABKQ09_RS02010 (ABKQ09_02010) - 393729..394094 (+) 366 WP_003328081.1 winged helix-turn-helix transcriptional regulator -

Sequence

Protein


Download         Length: 132 a.a.        Molecular weight: 14873.71 Da        Isoelectric Point: 4.7105

>NTDB_id=1035722 ABKQ09_RS01980 WP_003328075.1 389406..389804(-) (nin/comJ) [Bacillus atrophaeus strain F4]
MTNSWKPQELFISYHQFTIFQKNSKPPIIDWTDEAIEKGYAEADGAVSFEAQRNSKVFIILRLNSSDIVESYEKKATVPF
HVSGDGINIESVMSKRLSFDLPKGQYVFTCYTVPAEASDLHADTYIIDAAAQ

Nucleotide


Download         Length: 399 bp        

>NTDB_id=1035722 ABKQ09_RS01980 WP_003328075.1 389406..389804(-) (nin/comJ) [Bacillus atrophaeus strain F4]
TTGACAAATTCATGGAAACCGCAAGAGCTCTTTATCTCATATCATCAATTTACCATTTTTCAAAAGAATTCAAAGCCGCC
TATAATAGATTGGACGGATGAAGCGATTGAAAAAGGATATGCAGAGGCGGACGGAGCCGTTTCATTCGAAGCGCAGAGAA
ACTCCAAAGTGTTTATTATCTTGCGTCTCAACAGCTCAGACATAGTTGAATCCTATGAAAAAAAAGCAACTGTTCCTTTT
CATGTCTCAGGGGACGGGATAAATATAGAAAGTGTCATGTCAAAGAGGCTGTCATTTGATTTGCCGAAAGGTCAATACGT
CTTCACTTGCTATACCGTTCCCGCTGAAGCGTCAGACCTGCATGCAGATACATATATTATTGACGCTGCTGCACAATAA

Domains

Predicted by InterproScan.

Competence protein J (ComJ) (ComJ)

(9-129)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nin/comJ Bacillus subtilis subsp. subtilis str. 168

77.099

99.242

0.765

Multiple sequence alignment