Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   ABKQ09_RS00580 Genome accession   NZ_CP166870
Coordinates   105941..107320 (+) Length   459 a.a.
NCBI ID   WP_013390723.1    Uniprot ID   -
Organism   Bacillus atrophaeus strain F4     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 100941..112320
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABKQ09_RS00560 (ABKQ09_00560) ctsR 101295..101759 (+) 465 WP_003328320.1 transcriptional regulator CtsR -
  ABKQ09_RS00565 (ABKQ09_00565) - 101773..102330 (+) 558 WP_003328319.1 UvrB/UvrC motif-containing protein -
  ABKQ09_RS00570 (ABKQ09_00570) - 102330..103421 (+) 1092 WP_010787416.1 protein arginine kinase -
  ABKQ09_RS00575 (ABKQ09_00575) clpC 103418..105856 (+) 2439 WP_003328317.1 ATP-dependent protease ATP-binding subunit ClpC Regulator
  ABKQ09_RS00580 (ABKQ09_00580) radA 105941..107320 (+) 1380 WP_013390723.1 DNA repair protein RadA Machinery gene
  ABKQ09_RS00585 (ABKQ09_00585) disA 107324..108406 (+) 1083 WP_010787418.1 DNA integrity scanning diadenylate cyclase DisA -
  ABKQ09_RS00590 (ABKQ09_00590) - 108527..109627 (+) 1101 WP_003328314.1 PIN/TRAM domain-containing protein -
  ABKQ09_RS00595 (ABKQ09_00595) ispD 109641..110339 (+) 699 WP_094231235.1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase -
  ABKQ09_RS00600 (ABKQ09_00600) ispF 110332..110808 (+) 477 WP_003328312.1 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase -

Sequence

Protein


Download         Length: 459 a.a.        Molecular weight: 49604.03 Da        Isoelectric Point: 7.9893

>NTDB_id=1035720 ABKQ09_RS00580 WP_013390723.1 105941..107320(+) (radA) [Bacillus atrophaeus strain F4]
MAKSKTKFICQSCGYESAKWMGKCPGCGAWNTMTEETVKKTPANRRAAFAHSTQTVKKPSPITSIETSEEPRIKTQLGEF
NRVLGGGVVKGSLVLIGGDPGIGKSTLLLQVSAQLSDSTHSVLYISGEESVKQTKLRADRLDINNQTLHVLAETDMEYIS
SAIQEMNPAFVVVDSIQTVYQSDITSAPGSVSQVRECTAELMRIAKTKGIPIFIVGHVTKEGSIAGPRLLEHMVDTVLYF
EGERHHTFRILRAVKNRFGSTNEMGIFEMREEGLTEVLNPSEIFLEERSAGAAGSSIVASMEGTRPILVEIQALISPTSF
GNPRRMATGIDHNRVSLLMAVLEKRVGLLLQNQDAYLKVAGGVKLDEPAIDLAVAVSIASSFRDTPPNPADCIIGEVGLT
GEVRRVSRIEQRVKEAAKLGFKRMIIPAANLDGWTKPKGIEVVGVANVAEALRTSLGGS

Nucleotide


Download         Length: 1380 bp        

>NTDB_id=1035720 ABKQ09_RS00580 WP_013390723.1 105941..107320(+) (radA) [Bacillus atrophaeus strain F4]
ATGGCTAAATCAAAAACGAAATTTATCTGCCAATCCTGCGGCTATGAATCCGCAAAGTGGATGGGGAAATGTCCAGGCTG
CGGAGCTTGGAACACAATGACAGAAGAAACAGTAAAAAAAACACCGGCTAATCGCAGAGCAGCTTTTGCACACTCTACCC
AAACCGTAAAGAAACCTTCACCTATCACATCAATAGAAACATCTGAAGAACCCCGAATTAAAACACAGCTTGGAGAATTT
AACAGAGTGCTGGGCGGCGGTGTTGTGAAGGGCTCACTTGTCTTAATTGGAGGAGATCCGGGTATTGGTAAGTCAACCTT
GCTGCTTCAGGTATCCGCTCAGTTATCAGACTCCACGCATAGTGTGCTCTACATTTCAGGCGAGGAATCTGTGAAACAAA
CGAAACTCAGAGCAGATCGGCTCGATATTAATAACCAAACGTTACATGTTTTAGCTGAAACCGACATGGAGTATATTTCG
TCTGCTATACAAGAGATGAATCCAGCATTTGTGGTTGTTGACTCCATTCAGACGGTCTATCAAAGCGATATTACATCAGC
TCCGGGCAGTGTGTCGCAAGTCAGGGAGTGTACGGCAGAGCTGATGAGAATTGCTAAGACGAAGGGTATACCGATTTTTA
TCGTAGGACATGTAACAAAAGAAGGTTCAATTGCTGGTCCGAGACTGTTGGAACATATGGTTGATACTGTTCTTTACTTT
GAAGGAGAGCGGCATCATACGTTCCGCATCCTGCGGGCAGTAAAAAACCGTTTCGGCTCTACAAATGAAATGGGCATTTT
CGAAATGCGGGAAGAGGGTCTGACAGAGGTGCTGAATCCTTCTGAAATCTTTCTTGAGGAACGATCAGCCGGAGCGGCAG
GTTCCAGCATAGTAGCATCTATGGAAGGCACCAGACCGATTCTTGTGGAAATACAGGCCCTTATCTCACCGACCAGCTTT
GGGAATCCCCGGCGTATGGCCACGGGAATTGACCATAACAGAGTGTCACTGCTCATGGCAGTGTTAGAAAAAAGAGTCGG
GCTGCTGCTTCAAAATCAAGATGCGTATTTAAAGGTAGCAGGCGGCGTTAAGCTGGATGAACCGGCAATCGATCTCGCTG
TAGCTGTCAGTATTGCATCAAGCTTTAGGGATACACCGCCTAATCCTGCCGACTGCATTATAGGAGAAGTCGGTTTAACA
GGTGAGGTCCGCAGGGTATCCAGAATTGAACAGCGTGTGAAAGAAGCTGCTAAACTTGGATTTAAGCGTATGATCATACC
TGCGGCGAATTTAGATGGATGGACAAAACCAAAAGGGATTGAGGTTGTCGGAGTAGCAAATGTTGCAGAAGCGCTTCGTA
CTTCATTAGGAGGATCATAA

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(69-222)

Subunit ChlI of Mg-chelatase (ChlI)

(365-430)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

94.105

99.782

0.939
  radA Streptococcus mitis NCTC 12261

63.355

98.693

0.625
  radA Streptococcus pneumoniae Rx1

63.355

98.693

0.625
  radA Streptococcus pneumoniae D39

63.355

98.693

0.625
  radA Streptococcus pneumoniae R6

63.355

98.693

0.625
  radA Streptococcus pneumoniae TIGR4

63.355

98.693

0.625
  radA Streptococcus mitis SK321

63.135

98.693

0.623

Multiple sequence alignment