Detailed information
Bioinformatically predicted
Overview
| Name | abrB | Type | Regulator |
| Locus tag | ABKQ09_RS00245 | Genome accession | NZ_CP166870 |
| Coordinates | 44540..44830 (-) | Length | 96 a.a. |
| NCBI ID | WP_087941801.1 | Uniprot ID | - |
| Organism | Bacillus atrophaeus strain F4 | ||
| Function | repression of comK; repression of rok (predicted from homology) Competence regulation |
||
Genomic Context
Location: 39540..49830
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ABKQ09_RS00205 (ABKQ09_00205) | darA | 39558..39887 (+) | 330 | WP_003328606.1 | cyclic di-AMP receptor DarA | - |
| ABKQ09_RS00210 (ABKQ09_00210) | - | 39900..40340 (+) | 441 | WP_003328605.1 | YaaR family protein | - |
| ABKQ09_RS00215 (ABKQ09_00215) | holB | 40352..41341 (+) | 990 | WP_010787388.1 | DNA polymerase III subunit delta' | - |
| ABKQ09_RS00220 (ABKQ09_00220) | ricT | 41344..42171 (+) | 828 | WP_003328602.1 | competence/sporulation regulator complex protein RicT | - |
| ABKQ09_RS00225 (ABKQ09_00225) | yabA | 42186..42545 (+) | 360 | WP_003328601.1 | replication initiation-control protein YabA | - |
| ABKQ09_RS00230 (ABKQ09_00230) | - | 42606..43349 (+) | 744 | WP_003328600.1 | tRNA1(Val) (adenine(37)-N6)-methyltransferase | - |
| ABKQ09_RS00235 (ABKQ09_00235) | - | 43336..43635 (+) | 300 | WP_003328599.1 | GIY-YIG nuclease family protein | - |
| ABKQ09_RS00240 (ABKQ09_00240) | rsmI | 43610..44488 (+) | 879 | WP_034717636.1 | 16S rRNA (cytidine(1402)-2'-O)-methyltransferase | - |
| ABKQ09_RS00245 (ABKQ09_00245) | abrB | 44540..44830 (-) | 291 | WP_087941801.1 | transition state genes transcriptional regulator AbrB | Regulator |
| ABKQ09_RS00250 (ABKQ09_00250) | metG | 45317..47311 (+) | 1995 | WP_106035162.1 | methionine--tRNA ligase | - |
| ABKQ09_RS00255 (ABKQ09_00255) | - | 47390..48157 (+) | 768 | WP_010787391.1 | TatD family hydrolase | - |
| ABKQ09_RS00260 (ABKQ09_00260) | - | 48315..49640 (+) | 1326 | WP_371176247.1 | ubiquitin-like domain-containing protein | - |
Sequence
Protein
Download Length: 96 a.a. Molecular weight: 10801.62 Da Isoelectric Point: 6.3482
>NTDB_id=1035718 ABKQ09_RS00245 WP_087941801.1 44540..44830(-) (abrB) [Bacillus atrophaeus strain F4]
MFMKSTGIVRKVDELGRVVIPIELRRTLGIAEKDALEIYVDDEKIILKKYKPNMTCQVTGEVSDDNLKLAGGKLVLSQEG
AEQIIKEIQNQLQSQK
MFMKSTGIVRKVDELGRVVIPIELRRTLGIAEKDALEIYVDDEKIILKKYKPNMTCQVTGEVSDDNLKLAGGKLVLSQEG
AEQIIKEIQNQLQSQK
Nucleotide
Download Length: 291 bp
>NTDB_id=1035718 ABKQ09_RS00245 WP_087941801.1 44540..44830(-) (abrB) [Bacillus atrophaeus strain F4]
ATGTTTATGAAATCTACTGGTATCGTACGTAAAGTTGATGAACTAGGACGTGTAGTTATTCCTATCGAACTGCGCCGTAC
ACTTGGAATCGCAGAAAAAGACGCTCTTGAAATTTATGTTGATGATGAAAAAATCATCCTTAAAAAATATAAGCCTAACA
TGACTTGCCAAGTAACTGGTGAAGTTTCTGACGATAACCTTAAACTTGCAGGCGGCAAATTGGTTCTTAGCCAAGAAGGC
GCTGAGCAAATCATTAAAGAAATCCAAAACCAGCTTCAAAGCCAAAAATAA
ATGTTTATGAAATCTACTGGTATCGTACGTAAAGTTGATGAACTAGGACGTGTAGTTATTCCTATCGAACTGCGCCGTAC
ACTTGGAATCGCAGAAAAAGACGCTCTTGAAATTTATGTTGATGATGAAAAAATCATCCTTAAAAAATATAAGCCTAACA
TGACTTGCCAAGTAACTGGTGAAGTTTCTGACGATAACCTTAAACTTGCAGGCGGCAAATTGGTTCTTAGCCAAGAAGGC
GCTGAGCAAATCATTAAAGAAATCCAAAACCAGCTTCAAAGCCAAAAATAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| abrB | Bacillus subtilis subsp. subtilis str. 168 |
95.833 |
100 |
0.958 |