Detailed information NTG1035712

Bioinformatically predicted

Overview

• Name: pilA
• Type: Machinery gene
• Locus tag: ABVF47_RS08300
• Genome accession: NZ_CP166869
• Coordinates: 1844598..1845872 (+)
• Length: 424 a.a.
• NCBI ID: WP_371687900.1
• Uniprot ID: -
• Organism: Snodgrassella alvi strain Acer06
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1839598..1850872

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ABVF47_RS08275 (ABVF47_008275)	bioH	1840409..1841161 (-)	753	WP_371687898.1	pimeloyl-ACP methyl ester esterase BioH	-
ABVF47_RS08280 (ABVF47_008280)	-	1841160..1841870 (+)	711	WP_370388442.1	ComF family protein	-
ABVF47_RS08285 (ABVF47_008285)	-	1842248..1842943 (+)	696	WP_370388441.1	septal ring lytic transglycosylase RlpA family protein	-
ABVF47_RS08290 (ABVF47_008290)	ruvA	1843022..1843600 (+)	579	WP_100151497.1	Holliday junction branch migration protein RuvA	-
ABVF47_RS08295 (ABVF47_008295)	-	1843642..1844190 (+)	549	WP_371687899.1	5'-3'-deoxyribonucleotidase	-
ABVF47_RS08300 (ABVF47_008300)	pilA	1844598..1845872 (+)	1275	WP_371687900.1	signal recognition particle-docking protein FtsY	Machinery gene
ABVF47_RS08305 (ABVF47_008305)	-	1846393..1847523 (-)	1131	WP_371687901.1	5-methylcytosine-specific restriction endonuclease system specificity protein McrC	-
ABVF47_RS08310 (ABVF47_008310)	-	1847529..1847981 (-)	453	WP_371687902.1	hypothetical protein	-
ABVF47_RS08315 (ABVF47_008315)	-	1848020..1849207 (-)	1188	WP_371687903.1	McrB family protein	-

Sequence

Protein

• Length: 424 a.a.
• Molecular weight: 45402.53 Da
• Isoelectric Point: 4.6457

>NTDB_id=1035712 ABVF47_RS08300 WP_371687900.1 1844598..1845872(+) (pilA) [Snodgrassella alvi strain Acer06]
MFGFFKRKKNTEPEQEQASVNPAQPESVEQPDTAAETHTQPEPAASHQSVEKHTANAVVSESTATETTEDIIVPAAVDEP
AAIATSTESEVVQAPASENTIVIPVETTEIPSETDKPARLGWAARLKQGLSKSRNQMAKSLASVFGGGKIDEDLYEELET
VLLTSDMGIEATEKLLAQVRQRVTLKGLKNGNELRSALKEALYELLQPLQQPLSIPADKKPFVIMMAGVNGAGKTTSIGK
LAKYFQSQGKSVLLAAGDTFRAAAREQLQQWGERNNVTVIAQESGDSAAVCFDALEAAKARGIDIVLADTAGRLPTQLHL
MEEIKKVKRVLQKSLPEAPHEIMLVLDANVGQNAINQVVAFDDALGLTGLIVSKLDGTAKGGILAALAAKRPIPVRFIGV
GEGIDDLRPFDAKAFVDALIEDEE

Nucleotide

• Length: 1275 bp

>NTDB_id=1035712 ABVF47_RS08300 WP_371687900.1 1844598..1845872(+) (pilA) [Snodgrassella alvi strain Acer06]
ATGTTTGGATTTTTTAAAAGAAAAAAAAATACAGAGCCAGAGCAAGAACAAGCCAGCGTTAACCCCGCTCAGCCGGAATC
AGTAGAGCAACCCGATACAGCGGCTGAAACTCATACTCAGCCTGAACCGGCTGCTTCCCACCAGAGCGTAGAAAAGCACA
CAGCGAATGCAGTCGTCTCCGAATCAACAGCTACCGAAACAACAGAAGACATCATCGTACCGGCAGCCGTAGATGAACCG
GCCGCCATTGCCACCAGCACGGAATCAGAAGTTGTTCAGGCTCCGGCCAGCGAAAACACCATAGTGATTCCAGTAGAAAC
CACAGAAATACCTAGCGAAACAGACAAACCAGCTCGACTGGGCTGGGCAGCACGGCTCAAACAGGGTCTAAGCAAATCGC
GCAACCAGATGGCCAAATCGCTGGCGTCTGTATTTGGTGGCGGCAAAATCGATGAAGACCTGTACGAAGAGCTGGAAACA
GTATTGCTCACCAGTGATATGGGTATCGAAGCCACCGAAAAACTACTGGCACAGGTACGCCAGCGCGTTACCCTGAAAGG
ATTGAAAAACGGAAACGAACTGCGCAGCGCCCTGAAAGAAGCCTTATATGAATTACTGCAGCCACTTCAGCAGCCCTTGT
CCATACCTGCTGATAAAAAACCTTTTGTTATCATGATGGCTGGTGTAAACGGAGCAGGCAAAACCACCAGTATCGGCAAA
CTGGCCAAATATTTTCAAAGTCAGGGTAAAAGCGTCCTGCTGGCCGCTGGCGACACATTCCGCGCTGCTGCGCGCGAGCA
ATTACAGCAATGGGGTGAGCGCAATAACGTAACCGTAATTGCGCAGGAATCCGGTGATTCTGCTGCCGTCTGCTTCGATG
CCCTTGAAGCAGCCAAAGCACGTGGTATCGATATCGTACTGGCTGATACCGCTGGCCGCTTGCCAACCCAGCTGCATCTG
ATGGAAGAAATCAAAAAAGTAAAACGCGTGTTGCAAAAATCATTACCCGAAGCACCACACGAAATCATGCTGGTACTTGA
TGCCAACGTCGGCCAGAACGCCATCAATCAAGTAGTCGCTTTCGACGACGCCCTTGGCCTAACCGGCCTGATCGTTTCTA
AACTGGATGGCACCGCAAAAGGCGGTATCCTCGCCGCACTGGCCGCCAAACGCCCGATACCAGTACGCTTCATCGGTGTA
GGCGAAGGCATCGACGATTTACGCCCGTTTGACGCCAAAGCATTTGTAGATGCATTGATTGAGGATGAAGAATAA

Domains

Predicted by InterproScan.

• SRP54-type protein, helical bundle domain (SRP54_N) (137-202)

• SRP54-type protein, GTPase domain (SRP54) (221-420)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilA	Neisseria gonorrhoeae MS11	65.566	100	0.656