Detailed information    

insolico Bioinformatically predicted

Overview

Name   recX   Type   Regulator
Locus tag   ABVF47_RS04675 Genome accession   NZ_CP166869
Coordinates   1018241..1018714 (+) Length   157 a.a.
NCBI ID   WP_100139939.1    Uniprot ID   -
Organism   Snodgrassella alvi strain Acer06     
Function   inhibition of RecA (predicted from homology)   
Competence regulation

Genomic Context

Location: 1013241..1023714
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABVF47_RS04655 (ABVF47_004655) - 1014498..1014845 (-) 348 WP_367421817.1 hypothetical protein -
  ABVF47_RS04660 (ABVF47_004660) - 1015014..1016327 (+) 1314 WP_371688357.1 replication-associated recombination protein A -
  ABVF47_RS04665 (ABVF47_004665) - 1016314..1017384 (+) 1071 WP_267390076.1 aldose epimerase family protein -
  ABVF47_RS04670 (ABVF47_004670) - 1017537..1018244 (+) 708 WP_371688358.1 phosphoglycolate phosphatase -
  ABVF47_RS04675 (ABVF47_004675) recX 1018241..1018714 (+) 474 WP_100139939.1 recombination regulator RecX Regulator
  ABVF47_RS04680 (ABVF47_004680) - 1018849..1019802 (-) 954 WP_267390074.1 bile acid:sodium symporter family protein -
  ABVF47_RS04685 (ABVF47_004685) rpsT 1019835..1020101 (-) 267 WP_025330392.1 30S ribosomal protein S20 -
  ABVF47_RS04690 (ABVF47_004690) - 1020231..1021349 (-) 1119 WP_370389361.1 AI-2E family transporter -
  ABVF47_RS04695 (ABVF47_004695) lpdA 1021610..1023364 (-) 1755 WP_367441332.1 dihydrolipoyl dehydrogenase -

Sequence

Protein


Download         Length: 157 a.a.        Molecular weight: 18483.13 Da        Isoelectric Point: 9.5467

>NTDB_id=1035701 ABVF47_RS04675 WP_100139939.1 1018241..1018714(+) (recX) [Snodgrassella alvi strain Acer06]
MKPKISLRGRAIAILARQEISRAELTRKLRPHVEENDDIESLLDELAERHWQSDARYAETYINSKSRIHGNLRLQQSLKQ
KGVKAELIADYLPNKAEQISNAVAVLQKKYRRPPSDLKEKHKYMHFLAYRGFSMDIINTAMHRAWEESILPEEEFWE

Nucleotide


Download         Length: 474 bp        

>NTDB_id=1035701 ABVF47_RS04675 WP_100139939.1 1018241..1018714(+) (recX) [Snodgrassella alvi strain Acer06]
ATGAAACCAAAAATCAGCTTACGCGGCCGTGCCATTGCTATATTGGCACGGCAAGAAATCAGCCGTGCTGAGCTGACACG
TAAATTACGCCCGCATGTAGAAGAAAACGATGATATTGAATCTTTGCTAGATGAACTAGCCGAGCGGCACTGGCAATCTG
ATGCTCGCTATGCGGAAACCTACATCAACAGTAAAAGCCGTATACACGGCAATCTGCGATTACAGCAAAGCCTTAAACAA
AAAGGAGTTAAAGCGGAGCTGATAGCCGATTATCTGCCAAACAAAGCGGAACAAATCAGTAATGCAGTCGCTGTTTTACA
AAAAAAATATCGCCGGCCTCCATCTGATTTAAAAGAAAAGCACAAATATATGCATTTTCTAGCCTATCGTGGATTTAGCA
TGGATATTATCAATACAGCTATGCATCGTGCTTGGGAAGAGAGTATTCTTCCAGAGGAAGAGTTTTGGGAATAG

Domains

Predicted by InterproScan.

RecX family (RecX_HTH2)

(31-143)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recX Neisseria gonorrhoeae strain FA1090

52.703

94.268

0.497

Multiple sequence alignment