Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   AB9P00_RS05130 Genome accession   NZ_CP166868
Coordinates   1017095..1018909 (-) Length   604 a.a.
NCBI ID   WP_270622171.1    Uniprot ID   -
Organism   Weissella viridescens strain XBS25     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 1012095..1023909
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB9P00_RS05095 - 1012621..1013586 (-) 966 WP_057746268.1 DUF561 domain-containing protein -
  AB9P00_RS05100 - 1013608..1013850 (-) 243 WP_072152721.1 acyl carrier protein -
  AB9P00_RS05105 - 1013932..1014903 (-) 972 WP_371190370.1 beta-ketoacyl-ACP synthase III -
  AB9P00_RS05110 - 1014914..1015375 (-) 462 WP_057746260.1 MarR family winged helix-turn-helix transcriptional regulator -
  AB9P00_RS05115 fabZ 1015393..1015839 (-) 447 WP_371190371.1 3-hydroxyacyl-ACP dehydratase FabZ -
  AB9P00_RS05120 - 1015992..1016591 (-) 600 WP_220673190.1 hypothetical protein -
  AB9P00_RS05125 - 1016606..1016986 (-) 381 WP_057746252.1 DUF948 domain-containing protein -
  AB9P00_RS05130 pepF 1017095..1018909 (-) 1815 WP_270622171.1 oligoendopeptidase F Regulator
  AB9P00_RS05135 - 1018983..1019897 (-) 915 WP_371190372.1 competence protein CoiA family protein -
  AB9P00_RS05140 - 1019987..1020727 (-) 741 WP_057746244.1 adaptor protein MecA -
  AB9P00_RS05145 - 1020809..1021327 (-) 519 WP_057746241.1 antibiotic biosynthesis monooxygenase -
  AB9P00_RS05150 - 1021393..1022127 (-) 735 WP_270622173.1 CPBP family intramembrane glutamic endopeptidase -
  AB9P00_RS05155 - 1022117..1022332 (-) 216 WP_057746236.1 hypothetical protein -
  AB9P00_RS05160 mscL 1022518..1022940 (+) 423 WP_220673194.1 large conductance mechanosensitive channel protein MscL -
  AB9P00_RS05165 - 1023096..1023740 (+) 645 WP_057746231.1 deoxynucleoside kinase -

Sequence

Protein


Download         Length: 604 a.a.        Molecular weight: 68038.47 Da        Isoelectric Point: 4.2650

>NTDB_id=1035685 AB9P00_RS05130 WP_270622171.1 1017095..1018909(-) (pepF) [Weissella viridescens strain XBS25]
MANTLPTRDEVPTSQTWDLSTIYPTDAAWEAAFADLSDRLDGATYFAEHVTDSGAALLQALQYGLGLMRDLETLYVYASM
KNDQDTTNSQYQGMFDQVQGLAARVSSAIAFFDPAVLSLTDAQWQEFKATTPELADYQHYFDAILTQKGHVLSADQESLL
AAAGDVFGASEKTFSILDNADIKFGTVKNDAGETEQLSNGVYARLLESTNPSVRKETFQTFYKSYIALENTFASTLSSHI
KGHNFMAQAHHYDSARQASLAANQVAEVVYETLVEQVNQALPLLHRYVALRKRLLGLQELHSYDLYTPILGEPDYAIDFE
SAKAEALEALAPLGEDYLDIVNQAFDSRWIDVVENQGKRSGAYSGGAYDTNPFMLLNWVDNLNNLYTLVHEMGHSAHSYL
TRHNQPYQYGDYPIFLAEIASTTNENLLTDYLLKTVDDKALRAYILNQYLDGFKGTVFRQTQFAEFEQWMHQQDAAGVPL
TAEVLDQAYADLNQRYYGEALTPDPEIAHEWERIPHFYYNFYVFQYSTGFAAATALSDQIIQEGQPAVDRYKTYLKAGSS
AYPIDVMKQAGVDMTKPDYLQEAFATFEQRLNEFEELVQELEQK

Nucleotide


Download         Length: 1815 bp        

>NTDB_id=1035685 AB9P00_RS05130 WP_270622171.1 1017095..1018909(-) (pepF) [Weissella viridescens strain XBS25]
ATGGCCAATACATTACCAACCAGAGATGAGGTTCCAACCAGTCAGACGTGGGATCTTAGTACGATTTATCCAACTGATGC
AGCCTGGGAAGCGGCCTTTGCAGATTTAAGTGACCGCTTGGATGGGGCAACCTATTTTGCTGAGCACGTCACTGATTCAG
GGGCTGCGCTGTTACAAGCGCTTCAATATGGACTAGGGTTGATGCGTGATTTGGAAACGCTCTACGTTTACGCATCAATG
AAAAATGATCAAGATACGACTAATAGTCAGTATCAAGGGATGTTTGACCAAGTACAGGGACTAGCCGCACGTGTTTCAAG
CGCGATTGCCTTCTTTGATCCAGCAGTATTGTCATTAACGGATGCACAATGGCAGGAATTTAAGGCAACTACGCCAGAAT
TGGCCGATTACCAACACTATTTTGATGCCATTTTAACGCAGAAGGGACATGTGCTTTCGGCAGATCAAGAATCACTTTTG
GCGGCAGCTGGCGACGTTTTTGGTGCCTCAGAAAAGACATTTAGTATCCTGGATAATGCAGACATCAAATTTGGTACTGT
GAAAAATGATGCTGGTGAGACGGAACAACTATCAAACGGCGTTTATGCGCGTTTATTGGAATCAACCAATCCATCTGTAC
GTAAAGAAACTTTCCAAACTTTCTATAAGTCTTATATTGCGTTGGAAAATACTTTTGCATCAACGCTATCAAGCCACATT
AAGGGGCATAATTTTATGGCGCAAGCGCATCATTATGACAGCGCACGTCAAGCGTCTTTGGCTGCCAATCAGGTGGCCGA
AGTGGTTTACGAGACCTTGGTTGAACAAGTTAACCAAGCGTTGCCATTATTGCACCGGTATGTTGCATTGCGGAAGCGCC
TACTAGGTTTGCAAGAACTTCATTCCTATGATTTATACACCCCTATTTTAGGTGAACCGGATTATGCAATTGATTTTGAG
TCTGCTAAAGCCGAAGCGTTAGAGGCTTTGGCACCATTAGGGGAAGACTATTTAGATATTGTGAATCAGGCGTTTGACTC
ACGATGGATTGATGTTGTTGAAAATCAAGGGAAGCGATCAGGTGCTTACTCTGGTGGGGCGTATGATACAAATCCGTTCA
TGTTGTTGAATTGGGTCGACAACTTGAATAACTTGTATACACTGGTTCACGAAATGGGTCATAGTGCACACAGTTATCTA
ACCCGTCATAATCAACCCTATCAATATGGAGACTACCCAATTTTCTTGGCTGAAATTGCGTCAACGACCAATGAAAACCT
ATTAACGGATTACTTATTAAAGACCGTTGATGATAAGGCTTTACGTGCCTATATTTTGAATCAGTATTTGGATGGCTTTA
AGGGAACCGTCTTCCGTCAAACACAATTTGCTGAATTTGAGCAATGGATGCATCAACAAGATGCGGCCGGGGTTCCGTTA
ACGGCTGAAGTTCTAGACCAAGCCTATGCTGATCTAAATCAGCGCTACTATGGTGAGGCATTGACGCCAGATCCAGAAAT
TGCTCATGAGTGGGAACGTATTCCACACTTCTATTACAATTTCTATGTCTTCCAATATAGTACTGGCTTTGCGGCGGCCA
CGGCGCTTTCTGATCAGATTATCCAAGAAGGGCAACCAGCTGTTGATCGTTACAAGACTTATCTTAAGGCGGGATCGTCT
GCCTACCCAATTGATGTGATGAAGCAAGCTGGTGTTGATATGACGAAACCAGATTATCTTCAAGAAGCCTTTGCAACTTT
TGAACAACGTTTGAATGAATTCGAAGAACTTGTGCAAGAGCTAGAACAAAAATAA

Domains

Predicted by InterproScan.

Peptidase family M3 (Peptidase_M3)

(205-585)

Oligopeptidase F (Peptidase_M3_N)

(117-184)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

53.288

98.179

0.523

Multiple sequence alignment