Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   AB8732_RS07185 Genome accession   NZ_CP166847
Coordinates   1467850..1469658 (-) Length   602 a.a.
NCBI ID   WP_135411849.1    Uniprot ID   -
Organism   Weissella confusa strain HYF86     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 1462850..1474658
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB8732_RS07155 - 1462860..1463255 (+) 396 WP_118703665.1 hypothetical protein -
  AB8732_RS07160 - 1463303..1464403 (-) 1101 WP_087044243.1 Xaa-Pro peptidase family protein -
  AB8732_RS07165 ccpA 1464648..1465652 (+) 1005 WP_003610147.1 catabolite control protein A -
  AB8732_RS07170 - 1465706..1466335 (-) 630 WP_056972931.1 hypothetical protein -
  AB8732_RS07175 - 1466364..1466753 (-) 390 WP_003610152.1 DUF948 domain-containing protein -
  AB8732_RS07180 - 1467064..1467783 (+) 720 WP_003610153.1 MIP/aquaporin family protein -
  AB8732_RS07185 pepF 1467850..1469658 (-) 1809 WP_135411849.1 oligoendopeptidase F Regulator
  AB8732_RS07190 - 1469739..1470749 (-) 1011 WP_118703668.1 competence protein CoiA -
  AB8732_RS07195 - 1470867..1472228 (-) 1362 WP_003610156.1 PTS sugar transporter subunit IIC -
  AB8732_RS07200 - 1472303..1473754 (-) 1452 WP_003610159.1 6-phospho-beta-glucosidase -
  AB8732_RS07205 - 1473754..1474080 (-) 327 WP_003610161.1 PTS lactose/cellobiose transporter subunit IIA -
  AB8732_RS07210 - 1474164..1474481 (-) 318 WP_135411848.1 PTS sugar transporter subunit IIB -

Sequence

Protein


Download         Length: 602 a.a.        Molecular weight: 67993.69 Da        Isoelectric Point: 4.1967

>NTDB_id=1035642 AB8732_RS07185 WP_135411849.1 1467850..1469658(-) (pepF) [Weissella confusa strain HYF86]
MAKELPLREELPESMTWDLSTIFASDEAWEDAFADLEDRLESAEFFAASVTNSATDLYNALQYGLGLMQDLEKLYVYASM
KSDQDTANTYYQGLNNMAESLAARVSAAIAFFDPAVLSLSEEELSEFFAAEPKLQDYKHYFDSILTQQGHVLPTEQEALL
AAAGDVFGASQRTFGVLDNADISFEAVENENGEMETLSNGVYSRLLESTKPEIRKNAFQTFYKSYMALENTFASLIGNHV
KGQNFMAAAHHYDNAREAALAGNHVPEVVYDTLVAEVNKALPLLHRYVGLRKKLLGLDELHSYDLYTPILGEPDYDVDYE
SAKAEALQALAPLGDDYLDIVNKAFDSRWIDVIENKGKRSGAYSGGSYDTNPFILLNWVDNLNNLSTLVHEMGHSVHSYY
TRQNQPYHYGDYPIFLAEIASTTNENLLTDYLLKTVDDKKLRAYILNQYLDGVKGTVFRQTQFAEFEQWMHVTDAEGTPL
TADVLDEAYGEMNRRYYGPELTFDEEIAHEWERIPHFYYNFYVFQYATGFAAATAMADKILTEGEPAVAAYKEYLQAGSS
AFPIDVMKKAGLDMTKPDYLQDTFKVFEERLNEFEALVNELA

Nucleotide


Download         Length: 1809 bp        

>NTDB_id=1035642 AB8732_RS07185 WP_135411849.1 1467850..1469658(-) (pepF) [Weissella confusa strain HYF86]
ATGGCAAAAGAATTACCATTGCGCGAAGAGTTGCCTGAGTCAATGACTTGGGATTTATCAACCATCTTTGCCTCTGACGA
AGCGTGGGAAGATGCTTTCGCGGATTTGGAAGACCGTCTTGAATCAGCTGAGTTCTTTGCAGCAAGTGTGACGAATTCTG
CAACGGATTTGTACAACGCTTTGCAATACGGCCTAGGCTTGATGCAAGATTTGGAAAAGTTGTATGTATATGCCTCAATG
AAGTCTGATCAAGACACGGCTAACACTTACTACCAAGGTTTGAACAACATGGCCGAGTCTTTGGCTGCTCGTGTGTCAGC
TGCGATTGCCTTCTTTGACCCAGCCGTTTTGAGCTTGTCAGAAGAAGAGTTGTCAGAATTCTTTGCAGCTGAGCCTAAGC
TACAAGACTACAAGCACTACTTTGATAGCATTTTGACGCAACAAGGTCACGTCTTGCCAACTGAGCAAGAGGCGCTTTTG
GCAGCCGCGGGTGATGTCTTTGGGGCATCACAACGTACATTTGGTGTGTTGGACAACGCTGATATTTCATTTGAAGCCGT
CGAAAATGAAAACGGTGAAATGGAAACATTGTCTAATGGTGTTTACTCACGTTTGTTGGAGTCAACGAAGCCTGAAATCC
GCAAGAATGCTTTCCAAACGTTCTACAAGTCATACATGGCTTTGGAGAACACGTTTGCCTCATTGATTGGTAACCATGTT
AAGGGACAAAACTTCATGGCTGCTGCGCACCACTACGACAATGCGCGTGAAGCTGCGTTGGCTGGTAACCATGTGCCTGA
AGTTGTTTACGATACGTTGGTTGCGGAAGTGAACAAGGCATTGCCATTGCTCCACCGTTATGTTGGTTTGCGTAAGAAGT
TGTTGGGCTTGGATGAGTTGCACTCATACGATCTTTACACGCCAATTTTGGGTGAACCAGATTATGATGTCGATTATGAA
TCAGCCAAGGCTGAAGCATTGCAGGCGTTGGCACCTTTGGGGGATGATTATCTTGATATCGTGAACAAGGCTTTTGATAG
TCGTTGGATTGATGTCATTGAAAACAAGGGTAAGCGTTCAGGTGCTTATTCAGGTGGATCATATGACACAAACCCATTCA
TTTTGTTGAACTGGGTGGATAACTTGAATAACTTGAGCACGCTGGTTCACGAAATGGGTCACTCAGTGCACTCATATTAC
ACGCGTCAAAACCAACCATATCACTATGGTGACTACCCAATTTTCTTGGCTGAGATTGCCTCAACGACGAACGAGAACTT
GTTGACGGATTACTTGTTGAAGACGGTTGATGACAAGAAGCTACGAGCTTACATCTTGAACCAATACTTGGATGGCGTTA
AGGGCACGGTCTTCCGTCAAACGCAATTTGCTGAGTTTGAGCAATGGATGCACGTAACGGATGCTGAGGGTACGCCTTTG
ACTGCTGACGTTTTGGATGAAGCGTATGGTGAGATGAACCGTCGTTACTATGGTCCAGAATTGACGTTTGATGAAGAAAT
TGCCCACGAATGGGAGCGTATTCCACACTTCTACTACAACTTCTACGTCTTCCAATATGCAACAGGCTTTGCAGCTGCAA
CCGCAATGGCAGACAAGATTTTGACTGAAGGTGAGCCGGCCGTGGCAGCTTACAAGGAATACTTGCAAGCTGGTTCATCA
GCATTCCCAATTGATGTGATGAAGAAGGCTGGTTTGGATATGACCAAGCCAGACTACCTACAAGACACATTCAAGGTCTT
CGAGGAACGTTTGAACGAGTTCGAAGCACTTGTTAACGAATTGGCCTAA

Domains

Predicted by InterproScan.

Oligopeptidase F (Peptidase_M3_N)

(117-184)

Peptidase family M3 (Peptidase_M3)

(205-585)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

53.638

98.173

0.527

Multiple sequence alignment