Detailed information NTG0103561

Bioinformatically predicted

Overview

• Name: rapF
• Type: Regulator
• Locus tag: KHU1_RS00505
• Genome accession: NZ_CP007242
• Coordinates: 97940..99061 (+)
• Length: 373 a.a.
• NCBI ID: WP_007409040.1
• Uniprot ID: -
• Organism: Bacillus amyloliquefaciens KHG19
• Function: inhibit the DNA-binding function of ComA (predicted from homology) Competence regulation

Genomic Context

Location: 92940..104061

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
KHU1_RS00485 (KHU1_0092)	-	93249..94244 (-)	996	WP_032870241.1	DUF5105 domain-containing protein	-
KHU1_RS00490 (KHU1_0093)	-	94371..95771 (+)	1401	WP_042634783.1	YcdB/YcdC domain-containing protein	-
KHU1_RS00495 (KHU1_0094)	-	95972..97330 (+)	1359	WP_015239098.1	YcdB/YcdC domain-containing protein	-
KHU1_RS00500 (KHU1_0095)	-	97327..97830 (-)	504	WP_007409039.1	M15 family metallopeptidase	-
KHU1_RS00505 (KHU1_0096)	rapF	97940..99061 (+)	1122	WP_007409040.1	tetratricopeptide repeat protein	Regulator
KHU1_RS00510 (KHU1_0097)	-	99177..99956 (+)	780	WP_020955275.1	glucose 1-dehydrogenase	-
KHU1_RS00515 (KHU1_0098)	-	100039..101718 (+)	1680	WP_042634785.1	glycoside hydrolase family 13 protein	-
KHU1_RS00520 (KHU1_0099)	-	101904..102863 (+)	960	WP_020955277.1	metal ABC transporter substrate-binding protein	-
KHU1_RS00525 (KHU1_0100)	-	102918..103613 (+)	696	WP_003156655.1	metal ABC transporter ATP-binding protein	-

Sequence

Protein

• Length: 373 a.a.
• Molecular weight: 44333.53 Da
• Isoelectric Point: 5.0806

>NTDB_id=103561 KHU1_RS00505 WP_007409040.1 97940..99061(+) (rapF) [Bacillus amyloliquefaciens KHG19]
MKSKIPSEEVAVKMNEWYKLIRAFEADQAEALKREIQYELEDMEENQDLLLYFSLMEFRHRIMLDKLKPMKDGDCQPPFS
EMLTEIEMNQQKLTGLLEYYFYYFRGMYEFKQKNFISAISHYKRAEEKLEYVEDDIEKAEFLYKISEVYYHIKQTFFSMN
YAGQALDIYKKYELYGMRRVQCKFIIAGNLMDAQQHKKALEYLECALEHAERLDDQYMIAAAYYNIGHCMYSLGDFCKAA
EDFERAAAGFEAHSFRQVIQAVFSLTHIYFKTEKYSEAAASCARGMRSAAEWEDEIYMTKFRLIKELYQGEGGQDSLKEY
FDILESKELLADTEELLQDAAHFFHKRENYKAASYFFSRLVGVQKRLQMNNYA

Nucleotide

• Length: 1122 bp

>NTDB_id=103561 KHU1_RS00505 WP_007409040.1 97940..99061(+) (rapF) [Bacillus amyloliquefaciens KHG19]
ATGAAATCCAAGATTCCATCTGAAGAAGTGGCCGTAAAGATGAATGAATGGTATAAGCTGATCCGCGCGTTTGAAGCCGA
TCAAGCTGAAGCGCTGAAGCGGGAGATTCAATATGAACTCGAAGATATGGAAGAGAACCAGGATTTATTGTTGTATTTTT
CATTGATGGAATTTCGGCACCGCATCATGCTGGATAAATTAAAACCCATGAAAGACGGCGACTGCCAGCCTCCGTTCTCT
GAAATGCTCACTGAGATTGAGATGAACCAGCAAAAGCTGACCGGCTTACTGGAATATTATTTTTACTATTTCAGGGGAAT
GTATGAATTTAAGCAGAAAAACTTCATCTCAGCGATTTCTCATTATAAGCGGGCTGAGGAAAAGCTTGAATATGTGGAAG
ATGACATAGAGAAAGCCGAGTTTCTGTATAAAATTTCTGAGGTGTACTATCATATCAAGCAGACTTTCTTTTCGATGAAT
TACGCGGGACAGGCGCTTGATATTTACAAGAAATATGAATTATACGGAATGAGAAGGGTGCAGTGCAAATTTATCATTGC
CGGAAATCTGATGGACGCCCAGCAGCATAAAAAAGCGCTGGAATACCTCGAATGCGCCTTGGAACACGCGGAGCGGCTTG
ATGATCAATATATGATTGCTGCGGCCTATTATAATATCGGGCACTGTATGTACAGTCTGGGTGACTTTTGCAAGGCGGCG
GAGGATTTTGAACGGGCGGCTGCCGGATTTGAAGCACACAGCTTCCGGCAGGTCATCCAGGCTGTTTTTTCACTCACGCA
TATCTACTTTAAAACGGAAAAATACAGTGAAGCCGCCGCCAGCTGCGCGCGGGGCATGAGAAGCGCGGCGGAGTGGGAAG
ATGAGATCTATATGACGAAATTCCGTCTGATTAAAGAGCTTTATCAGGGGGAAGGCGGACAGGATTCGCTCAAAGAGTAT
TTTGACATTCTGGAATCAAAAGAGCTGTTGGCTGACACAGAGGAACTGCTTCAGGACGCGGCTCATTTCTTTCATAAACG
GGAGAACTACAAAGCGGCATCTTATTTTTTCAGCAGGCTTGTCGGCGTGCAAAAAAGGCTGCAAATGAACAACTACGCAT
AA

Domains

Predicted by InterProScan.

• Tetratricopeptide repeat (TPR_12) (187-251)

• response regulator aspartate phosphatase H, N terminal (RapH_N) (4-65)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rapF	Bacillus subtilis subsp. subtilis str. 168	42.588	99.464	0.424
rapC	Bacillus subtilis subsp. subtilis str. 168	40.323	99.732	0.402