Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   LWS60_RS20265 Genome accession   NZ_OU701452
Coordinates   4188949..4189617 (-) Length   222 a.a.
NCBI ID   WP_001297375.1    Uniprot ID   P65957
Organism   Escherichia coli isolate CNR65D6     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4183949..4194617
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LWS60_RS20235 rfaQ 4184127..4185185 (-) 1059 WP_001521608.1 lipopolysaccharide core heptosyltransferase RfaQ -
  LWS60_RS20240 waaA 4185598..4186875 (+) 1278 WP_000891564.1 lipid IV(A) 3-deoxy-D-manno-octulosonic acid transferase -
  LWS60_RS20245 coaD 4186883..4187362 (+) 480 WP_001171866.1 pantetheine-phosphate adenylyltransferase -
  LWS60_RS20250 mutM 4187401..4188210 (-) 810 WP_001114542.1 bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase -
  LWS60_RS20255 rpmG 4188308..4188475 (-) 168 WP_001051798.1 50S ribosomal protein L33 -
  LWS60_RS20260 rpmB 4188496..4188732 (-) 237 WP_000091955.1 50S ribosomal protein L28 -
  LWS60_RS20265 radC 4188949..4189617 (-) 669 WP_001297375.1 RadC family protein Machinery gene
  LWS60_RS20270 coaBC 4189789..4191009 (+) 1221 WP_000050171.1 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC -
  LWS60_RS20275 dut 4190987..4191445 (+) 459 WP_000976070.1 dUTP diphosphatase -
  LWS60_RS20280 slmA 4191552..4192148 (+) 597 WP_000818601.1 nucleoid occlusion factor SlmA -
  LWS60_RS20285 pyrE 4192185..4192826 (-) 642 WP_000806177.1 orotate phosphoribosyltransferase -
  LWS60_RS20290 rph 4192892..4193608 (-) 717 WP_001247093.1 ribonuclease PH -
  LWS60_RS20295 yicC 4193735..4194598 (+) 864 WP_000621336.1 YicC/YloC family endoribonuclease -

Sequence

Protein


Download         Length: 222 a.a.        Molecular weight: 25258.35 Da        Isoelectric Point: 7.9748

>NTDB_id=1035596 LWS60_RS20265 WP_001297375.1 4188949..4189617(-) (radC) [Escherichia coli isolate CNR65D6]
MKNNAQLLMPREKMLKFGISALTDVELLALFLRTGTRGKDVLTLAKEMLENFGSLYGLLTSEYEQFSGVHGIGVAKFAQL
KGIAELARRYYNVRMREESPLLSPEMTREFLQSQLTGEEREIFMVIFLDSQHRVITHSRLFSGTLNHVEVHPREIIREAI
KINASALILAHNHPSGCAEPSKADKLITERIIKSCQFMDLRVLDHIVIGRGEYVSFAERGWI

Nucleotide


Download         Length: 669 bp        

>NTDB_id=1035596 LWS60_RS20265 WP_001297375.1 4188949..4189617(-) (radC) [Escherichia coli isolate CNR65D6]
GTGAAAAACAATGCACAGCTGTTGATGCCGCGCGAAAAAATGCTGAAGTTTGGTATTAGCGCCTTAACGGATGTCGAGCT
GCTGGCGCTATTTCTGCGTACCGGAACGCGCGGTAAAGATGTATTAACCCTGGCAAAAGAGATGCTGGAGAATTTCGGCT
CTCTTTATGGCTTGTTAACCTCTGAATATGAACAATTTAGTGGTGTTCATGGAATTGGCGTGGCGAAATTTGCCCAGTTA
AAGGGGATTGCTGAACTAGCGCGGCGTTACTACAACGTGCGGATGCGTGAAGAAAGCCCTTTACTCAGCCCGGAGATGAC
GCGGGAATTTTTACAAAGCCAGCTCACGGGGGAGGAGCGGGAGATCTTTATGGTGATCTTTCTCGACTCACAACACCGGG
TTATAACGCATAGCCGTCTTTTTTCCGGCACGCTAAACCATGTTGAAGTCCATCCTCGGGAAATTATCCGCGAAGCGATA
AAAATAAATGCCTCGGCGCTGATCCTTGCACATAATCACCCTTCGGGTTGTGCTGAACCCAGTAAAGCGGATAAACTCAT
TACTGAACGGATAATAAAGAGTTGTCAGTTCATGGATTTACGCGTGCTCGACCATATCGTGATTGGGCGTGGAGAGTATG
TTTCTTTTGCCGAACGCGGCTGGATTTAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(103-220)

UPF0758 N-terminal (UPF0758_N)

(9-77)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P65957

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

49.55

100

0.496