Detailed information    

insolico Bioinformatically predicted

Overview

Name   kpsS   Type   Regulator
Locus tag   LWS60_RS16790 Genome accession   NZ_OU701452
Coordinates   3471564..3472796 (+) Length   410 a.a.
NCBI ID   WP_029701471.1    Uniprot ID   -
Organism   Escherichia coli isolate CNR65D6     
Function   repress natural transformation (predicted from homology)   
Competence regulation

Genomic Context

Location: 3466564..3477796
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LWS60_RS16775 - 3467079..3468755 (+) 1677 WP_001564067.1 polysaccharide biosynthesis/export family protein -
  LWS60_RS16780 kdsB 3468765..3469505 (+) 741 WP_001604840.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  LWS60_RS16785 - 3469502..3471529 (+) 2028 WP_029701472.1 capsular polysaccharide biosynthesis protein -
  LWS60_RS16790 kpsS 3471564..3472796 (+) 1233 WP_029701471.1 capsule biosynthesis protein Regulator
  LWS60_RS16795 - 3473058..3474026 (-) 969 WP_029701470.1 hypothetical protein -
  LWS60_RS16800 - 3474439..3475596 (-) 1158 WP_029701469.1 tetratricopeptide repeat protein -
  LWS60_RS16805 - 3475634..3476824 (-) 1191 WP_001542353.1 CDP-glycerol glycerophosphotransferase family protein -

Sequence

Protein


Download         Length: 410 a.a.        Molecular weight: 48876.46 Da        Isoelectric Point: 9.9544

>NTDB_id=1035581 LWS60_RS16790 WP_029701471.1 3471564..3472796(+) (kpsS) [Escherichia coli isolate CNR65D6]
MQDNALTILLSGKKYLLLQGPMGPFFNDVAEWLESLGRNAVNVVFNGGDRFYCRHRQYLAYYQTPKEFPGWLRDLQRQYD
FDTILCFGDCRPLHKEAKRWAKSKGIRFLAFEEGYLRPQFITVEEGGVNAYSSLPRDPDFYRKLPDMPAPHVENLKPSTM
KRIGHAMWYYLMGWHYRHEFPRYRHHKSFSPWYEARCWVRAYWRKQLYKVTQRKVLPRLMNELDQRYYLAVLQVYNDSQI
RNHSSYNDVRDYINEVMYSFSRKAPKESYLVIKHHPMDRGHRLYRPLIKRLSKEYGLGERVIYVHDLPMPELLRHAKAVV
TINSTAGISALIHNKPLKVMGNALYDIKGLTYQGHLHQFWQADFKPDMKLFKKFRGYLLVKTQVNGVYYGEMVFNKIKLD
EYFQSVSCQV

Nucleotide


Download         Length: 1233 bp        

>NTDB_id=1035581 LWS60_RS16790 WP_029701471.1 3471564..3472796(+) (kpsS) [Escherichia coli isolate CNR65D6]
ATGCAAGACAACGCACTAACCATTTTATTATCGGGTAAAAAATATCTGCTATTGCAGGGACCGATGGGACCTTTTTTCAA
TGACGTCGCCGAATGGTTAGAGTCATTAGGCCGTAACGCTGTGAATGTTGTCTTCAACGGCGGGGATCGTTTTTACTGCC
GCCATCGACAATACCTGGCTTACTACCAAACGCCGAAAGAGTTTCCCGGTTGGCTGCGAGATCTCCAACGACAATATGAC
TTTGATACCATCCTCTGTTTTGGTGACTGCCGCCCATTGCACAAAGAAGCAAAACGCTGGGCAAAGTCGAAAGGGATCCG
CTTTCTGGCATTTGAAGAAGGATATTTACGCCCGCAATTTATAACCGTTGAAGAAGGCGGAGTGAACGCATATTCATCGC
TACCGCGCGATCCGGATTTTTATCGTAAGTTGCCAGATATGCCTGCGCCGCACGTTGAGAACTTAAAACCTTCAACGATG
AAACGTATAGGTCATGCGATGTGGTATTACCTGATGGGCTGGCATTACCGTCATGAGTTCCCTCGCTACCGCCACCACAA
ATCATTTTCCCCCTGGTATGAGGCTCGTTGCTGGGTTCGTGCATACTGGCGCAAACAACTTTACAAGGTAACACAGCGTA
AGGTATTACCGAGGTTAATGAACGAGTTGGATCAACGTTATTATCTTGCCGTTTTGCAGGTATATAACGATAGCCAGATT
CGTAACCACAGCAGTTATAACGATGTACGTGACTATATTAATGAAGTCATGTACTCATTTTCGCGTAAAGCGCCGAAAGA
AAGTTATTTGGTGATCAAACATCATCCGATGGATCGTGGTCACAGACTCTATCGACCATTAATTAAGCGGTTAAGTAAGG
AATATGGCTTAGGTGAGCGAGTCATATACGTGCACGATCTCCCAATGCCGGAATTATTACGCCACGCAAAAGCAGTAGTG
ACAATTAACAGTACGGCAGGGATCTCTGCGCTGATTCATAACAAACCACTCAAAGTGATGGGCAATGCCCTGTACGACAT
CAAGGGATTGACGTATCAAGGGCATTTGCACCAGTTCTGGCAGGCCGATTTTAAACCGGATATGAAACTGTTTAAGAAGT
TTCGGGGGTATTTATTGGTGAAGACGCAGGTTAATGGGGTTTATTATGGGGAGATGGTTTTTAACAAGATAAAACTGGAT
GAATATTTTCAGAGCGTGTCGTGTCAAGTATGA

Domains

Predicted by InterProScan.

Capsule polysaccharide biosynthesis protein (Capsule_synth)

(83-389)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  kpsS Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

39.646

96.585

0.383