Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   LWS60_RS16725 Genome accession   NZ_OU701452
Coordinates   3460423..3460899 (+) Length   158 a.a.
NCBI ID   WP_021553055.1    Uniprot ID   -
Organism   Escherichia coli isolate CNR65D6     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3455423..3465899
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LWS60_RS16695 - 3455920..3456804 (+) 885 WP_001564055.1 YfjP family GTPase -
  LWS60_RS16700 - 3457007..3457687 (+) 681 WP_001278649.1 WYL domain-containing protein -
  LWS60_RS16705 - 3457838..3458515 (+) 678 WP_001564058.1 hypothetical protein -
  LWS60_RS16710 - 3458521..3458754 (+) 234 WP_001278293.1 DUF905 family protein -
  LWS60_RS16715 - 3458844..3459662 (+) 819 WP_001564059.1 DUF932 domain-containing protein -
  LWS60_RS16720 - 3459928..3460407 (+) 480 WP_001564060.1 antirestriction protein -
  LWS60_RS16725 radC 3460423..3460899 (+) 477 WP_021553055.1 JAB domain-containing protein Machinery gene
  LWS60_RS16730 - 3460964..3461185 (+) 222 WP_000692345.1 DUF987 domain-containing protein -
  LWS60_RS16735 - 3461348..3461716 (+) 369 WP_021553056.1 type IV toxin-antitoxin system YeeU family antitoxin -
  LWS60_RS16740 - 3461806..3462183 (+) 378 WP_001564063.1 TA system toxin CbtA family protein -
  LWS60_RS16745 - 3462180..3462356 (+) 177 Protein_3299 DUF5983 family protein -
  LWS60_RS16750 - 3462408..3462602 (+) 195 WP_024181941.1 DUF957 domain-containing protein -
  LWS60_RS16755 - 3462687..3463529 (+) 843 Protein_3301 DUF4942 domain-containing protein -
  LWS60_RS16760 - 3463860..3464042 (+) 183 Protein_3302 IS110 family transposase -
  LWS60_RS16765 - 3464852..3465835 (+) 984 WP_001296394.1 KpsF/GutQ family sugar-phosphate isomerase -

Sequence

Protein


Download         Length: 158 a.a.        Molecular weight: 17603.23 Da        Isoelectric Point: 7.6151

>NTDB_id=1035580 LWS60_RS16725 WP_021553055.1 3460423..3460899(+) (radC) [Escherichia coli isolate CNR65D6]
MQQISFLPGAMTPGERSLIQRALKTLDRHLHEPGVAFTSTRAAREWLILNMAGLEREEFRVLYLNNQNQLIAGETLFTGT
INRTEVHPREVIKRALYHNAAAVVLAHNHPSGEVTPSKADRLITERLVQALGLVDIRVPDHLIVGGSQVFSFAEHGLL

Nucleotide


Download         Length: 477 bp        

>NTDB_id=1035580 LWS60_RS16725 WP_021553055.1 3460423..3460899(+) (radC) [Escherichia coli isolate CNR65D6]
ATGCAACAGATTTCCTTTCTGCCCGGAGCGATGACGCCCGGCGAGCGCAGTCTCATTCAGCGGGCCCTGAAAACCCTGGA
CCGCCATCTTCATGAACCCGGCGTGGCCTTCACCTCCACCCGTGCGGCACGGGAATGGCTGATTCTGAACATGGCGGGAC
TGGAGCGTGAAGAATTCCGGGTGCTGTATCTGAATAACCAGAATCAGCTGATTGCCGGTGAAACCCTCTTCACCGGCACC
ATCAACCGCACGGAAGTCCATCCCCGGGAAGTGATTAAACGCGCCCTGTATCACAATGCCGCTGCTGTGGTGCTGGCACA
CAATCACCCGTCCGGTGAAGTCACACCCAGCAAGGCAGACCGCCTTATCACGGAACGTCTGGTACAGGCACTGGGCCTGG
TGGATATCCGGGTGCCGGACCATCTGATAGTCGGTGGCAGCCAGGTTTTCTCCTTTGCCGAACATGGTCTGCTTTAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(38-157)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

55.752

71.519

0.399